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From: Liliana Marie Prikler <liliana.prikler@HIDDEN> To: Andreas Enge <andreas@HIDDEN> Date: Wed, 26 Mar 2025 22:59:50 +0100 In-Reply-To: <Z-QEwD3ZUBUhCNBE@jurong> References: <9183f2cc94079fd5afda6b700459b3d91fccddc3.1742983831.git.liliana.prikler@HIDDEN> <Z-P1_kR7o4nfwrIM@jurong> <5fe1f8c3350aa9f0ba9109b168edb4dc4e5ae5a2.camel@HIDDEN> <Z-QEwD3ZUBUhCNBE@jurong> Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable User-Agent: Evolution 3.54.3 MIME-Version: 1.0 X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 55901-done Cc: 55901-done <at> debbugs.gnu.org, Sharlatan Hellseher <sharlatanus@HIDDEN>, Eric Bavier <bavier@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Am Mittwoch, dem 26.03.2025 um 14:44 +0100 schrieb Andreas Enge: > Am Wed, Mar 26, 2025 at 02:08:38PM +0100 schrieb Liliana Marie > Prikler: > > > The patch looks good, I have made a small modification to avoid > > > the > > > assoc-ref, see attached. Please feel free to push. > > Did you send the right file?=C2=A0 It lools like the assoc-ref is still > > there.=C2=A0 I know we could use #$output, but I don't feel too strongl= y > > about it.=C2=A0 WDYT? >=20 > Ah, sorry, I had probably forgotten to commit the local changes. Here > it is. I would say that #$output goes together with all the > "modernising" changes to packaging such as gexps, not using assoc- > ref, not ending a phase with #t, so I would prefer it. Fair enough. Pushed with these changes.
Liliana Marie Prikler <liliana.prikler@HIDDEN>:Liliana Marie Prikler <liliana.prikler@HIDDEN>:
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Date: Wed, 26 Mar 2025 14:44:32 +0100
From: Andreas Enge <andreas@HIDDEN>
To: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Subject: Re: [PATCH v2] gnu: Add lis.
Message-ID: <Z-QEwD3ZUBUhCNBE@jurong>
References: <9183f2cc94079fd5afda6b700459b3d91fccddc3.1742983831.git.liliana.prikler@HIDDEN>
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Am Wed, Mar 26, 2025 at 02:08:38PM +0100 schrieb Liliana Marie Prikler:
> > The patch looks good, I have made a small modification to avoid the
> > assoc-ref, see attached. Please feel free to push.
> Did you send the right file? It lools like the assoc-ref is still
> there. I know we could use #$output, but I don't feel too strongly
> about it. WDYT?
Ah, sorry, I had probably forgotten to commit the local changes. Here it is.
I would say that #$output goes together with all the "modernising" changes
to packaging such as gexps, not using assoc-ref, not ending a phase with #t,
so I would prefer it.
Andreas
--rUnBWd5EuMXNJSU9
Content-Type: text/plain; charset=us-ascii
Content-Disposition: attachment; filename=0001-gnu-Add-lis.patch
From afb324e09ff086d330ef9b667ee24bd9c9e832cc Mon Sep 17 00:00:00 2001
Message-ID: <afb324e09ff086d330ef9b667ee24bd9c9e832cc.1742996532.git.andreas@HIDDEN>
From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 11 Jun 2022 09:49:23 +0200
Subject: [PATCH] gnu: Add lis.
* gnu/packages/maths.scm (lis): New variable.
Change-Id: I68bf93787346815912d02b919cb5c9acf884483e
---
gnu/packages/maths.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 8baf3a0a7f..394897a448 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1198,6 +1198,45 @@ (define-public lapack
"See LICENSE in the distribution."))
(properties '((tunable? . #t)))))
+(define-public lis
+ (package
+ (name "lis")
+ (version "2.1.8")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://www.ssisc.org/lis/dl/lis-"
+ version ".zip"))
+ (sha256
+ (base32 "0nh2593xkcdv1c3gmj7i64ca393nn0ngqfl522yiwbidh9dvd1nl"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:configure-flags #~(list "--enable-fortran"
+ "--enable-f90"
+ "--enable-openmp"
+ "--enable-complex"
+ "--disable-sse2" ;; XXX: tuning
+ "--enable-shared")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'install 'install-doc
+ (lambda _
+ (let* ((share (string-append #$output "/share"))
+ (docdir (string-append share "/doc/lis-" #$version))
+ (mandir (string-append share "/man")))
+ (copy-recursively "doc/man" mandir)
+ ;; TODO: Build the manuals ourselves
+ (install-file "doc/lis-ug-en.pdf" docdir)
+ (install-file "doc/lis-ug-ja.pdf" docdir)))))))
+ (inputs (list openmpi))
+ (native-inputs (list gfortran unzip))
+ (home-page "https://www.ssisc.org/lis")
+ (synopsis "Solve discretized linear equations and eigenvalue problems")
+ (description "Lis is a parallel software library for solving discretized
+linear equations and eigenvalue problems that arise in the numerical solution
+of partial differential equations using iterative methods.")
+ (license license:bsd-3)))
+
(define-public clapack
(package
(name "clapack")
base-commit: 0c83bcfa812f49d5d8c91255548aad46ef3bfcb6
--
2.49.0
--rUnBWd5EuMXNJSU9--
guix-patches@HIDDEN:bug#55901; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN> To: Andreas Enge <andreas@HIDDEN> Date: Wed, 26 Mar 2025 14:08:38 +0100 In-Reply-To: <Z-P1_kR7o4nfwrIM@jurong> References: <9183f2cc94079fd5afda6b700459b3d91fccddc3.1742983831.git.liliana.prikler@HIDDEN> <Z-P1_kR7o4nfwrIM@jurong> Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable User-Agent: Evolution 3.54.3 MIME-Version: 1.0 X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 55901 Cc: 55901 <at> debbugs.gnu.org, Sharlatan Hellseher <sharlatanus@HIDDEN>, Eric Bavier <bavier@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Am Mittwoch, dem 26.03.2025 um 13:41 +0100 schrieb Andreas Enge: > your new message was dated to 2022, which is a bit surprising :) Yeah, I did not reset the author date. > The patch looks good, I have made a small modification to avoid the > assoc-ref, see attached. Please feel free to push. Did you send the right file? It lools like the assoc-ref is still there. I know we could use #$output, but I don't feel too strongly about it. WDYT? Cheers
guix-patches@HIDDEN:bug#55901; Package guix-patches.
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Date: Wed, 26 Mar 2025 13:41:34 +0100
From: Andreas Enge <andreas@HIDDEN>
To: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Subject: Re: [PATCH v2] gnu: Add lis.
Message-ID: <Z-P1_kR7o4nfwrIM@jurong>
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Hi again,
your new message was dated to 2022, which is a bit surprising :)
The patch looks good, I have made a small modification to avoid the
assoc-ref, see attached. Please feel free to push.
The project itself has a strange organisation: Their git repo is on
github, but there the tags stop at version 2.0.30, and latest releases
exist only as zip files (while they had tar.gz files in the past).
Andreas
--lhQhg+an20ir3V6S
Content-Type: text/plain; charset=us-ascii
Content-Disposition: attachment; filename=0001-gnu-Add-lis.patch
From d6867665c2f2d0c35d236b7709bfbfd6ac8d0aac Mon Sep 17 00:00:00 2001
Message-ID: <d6867665c2f2d0c35d236b7709bfbfd6ac8d0aac.1742992715.git.andreas@HIDDEN>
From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 11 Jun 2022 09:49:23 +0200
Subject: [PATCH] gnu: Add lis.
* gnu/packages/maths.scm (lis): New variable.
---
gnu/packages/maths.scm | 40 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 8baf3a0a7f..27c30f223e 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1198,6 +1198,46 @@ (define-public lapack
"See LICENSE in the distribution."))
(properties '((tunable? . #t)))))
+(define-public lis
+ (package
+ (name "lis")
+ (version "2.1.8")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://www.ssisc.org/lis/dl/lis-"
+ version ".zip"))
+ (sha256
+ (base32 "0nh2593xkcdv1c3gmj7i64ca393nn0ngqfl522yiwbidh9dvd1nl"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:configure-flags #~(list "--enable-fortran"
+ "--enable-f90"
+ "--enable-openmp"
+ "--enable-complex"
+ "--disable-sse2" ;; XXX: tuning
+ "--enable-shared")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'install 'install-doc
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (docdir (string-append out "/share/doc/lis-" #$version))
+ (mandir (string-append out "/share/man")))
+
+ (copy-recursively "doc/man" mandir)
+ ;; TODO: Build the manuals ourselves
+ (install-file "doc/lis-ug-en.pdf" docdir)
+ (install-file "doc/lis-ug-ja.pdf" docdir)))))))
+ (inputs (list openmpi))
+ (native-inputs (list gfortran unzip))
+ (home-page "https://www.ssisc.org/lis")
+ (synopsis "Solve discretized linear equations and eigenvalue problems")
+ (description "Lis is a parallel software library for solving discretized
+linear equations and eigenvalue problems that arise in the numerical solution
+of partial differential equations using iterative methods.")
+ (license license:bsd-3)))
+
(define-public clapack
(package
(name "clapack")
base-commit: 0c83bcfa812f49d5d8c91255548aad46ef3bfcb6
--
2.49.0
--lhQhg+an20ir3V6S--
guix-patches@HIDDEN:bug#55901; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 11 Jun 2022 09:49:23 +0200
Subject: [PATCH v2] gnu: Add lis.
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Content preview: * gnu/packages/maths.scm (lis): New variable. --- Hi Andreas,
thanks for looking into this. It's not been in my focus for a while, because
I'm not dealing with linear algebra daily, but given that the package still
sees development, I think it's worthwile to be [...]
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Content preview: * gnu/packages/maths.scm (lis): New variable. --- Hi Andreas,
thanks for looking into this. It's not been in my focus for a while, because
I'm not dealing with linear algebra daily, but given that the package still
sees development, I think it's worthwile to be [...]
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* gnu/packages/maths.scm (lis): New variable.
---
Hi Andreas,
thanks for looking into this. It's not been in my focus for a while,
because I'm not dealing with linear algebra daily, but given that the
package still sees development, I think it's worthwile to be included
in Guix.
I've updated the version and kept everything else about the package the
same. Tests still run fine on my machine.
Cheers
gnu/packages/maths.scm | 40 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 8baf3a0a7f..27c30f223e 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1198,6 +1198,46 @@ (define-public lapack
"See LICENSE in the distribution."))
(properties '((tunable? . #t)))))
+(define-public lis
+ (package
+ (name "lis")
+ (version "2.1.8")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://www.ssisc.org/lis/dl/lis-"
+ version ".zip"))
+ (sha256
+ (base32 "0nh2593xkcdv1c3gmj7i64ca393nn0ngqfl522yiwbidh9dvd1nl"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:configure-flags #~(list "--enable-fortran"
+ "--enable-f90"
+ "--enable-openmp"
+ "--enable-complex"
+ "--disable-sse2" ;; XXX: tuning
+ "--enable-shared")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'install 'install-doc
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (docdir (string-append out "/share/doc/lis-" #$version))
+ (mandir (string-append out "/share/man")))
+
+ (copy-recursively "doc/man" mandir)
+ ;; TODO: Build the manuals ourselves
+ (install-file "doc/lis-ug-en.pdf" docdir)
+ (install-file "doc/lis-ug-ja.pdf" docdir)))))))
+ (inputs (list openmpi))
+ (native-inputs (list gfortran unzip))
+ (home-page "https://www.ssisc.org/lis")
+ (synopsis "Solve discretized linear equations and eigenvalue problems")
+ (description "Lis is a parallel software library for solving discretized
+linear equations and eigenvalue problems that arise in the numerical solution
+of partial differential equations using iterative methods.")
+ (license license:bsd-3)))
+
(define-public clapack
(package
(name "clapack")
base-commit: dbef60edb356246855ad6749936ee511fc1a9b4b
--
2.49.0
guix-patches@HIDDEN:bug#55901; Package guix-patches.
Full text available.Received: (at 55901) by debbugs.gnu.org; 26 Mar 2025 09:22:04 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Wed Mar 26 05:22:04 2025 Received: from localhost ([127.0.0.1]:41369 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1txMxY-0007aI-CA for submit <at> debbugs.gnu.org; Wed, 26 Mar 2025 05:22:04 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:39648) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <andreas@HIDDEN>) id 1txMxV-0007Za-Mo for 55901 <at> debbugs.gnu.org; Wed, 26 Mar 2025 05:22:02 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id B95CE57C; Wed, 26 Mar 2025 10:21:55 +0100 (CET) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id 2X7DO5gZncjX; Wed, 26 Mar 2025 10:21:55 +0100 (CET) Received: from jurong (176-179-191-150.abo.bbox.fr [176.179.191.150]) by hera.aquilenet.fr (Postfix) with ESMTPSA id ACB5B1EB; Wed, 26 Mar 2025 10:21:54 +0100 (CET) Date: Wed, 26 Mar 2025 10:21:53 +0100 From: Andreas Enge <andreas@HIDDEN> To: Liliana Marie Prikler <liliana.prikler@HIDDEN> Subject: Re: [PATCH WIP] gnu: Add lis. Message-ID: <Z-PHMTF5NuEuC2IW@jurong> References: <6f63db3d7bd7d727b41675fce60dc82b62009f7e.camel@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: <6f63db3d7bd7d727b41675fce60dc82b62009f7e.camel@HIDDEN> X-Rspamd-Queue-Id: B95CE57C X-Spamd-Result: default: False [-4.09 / 15.00]; NEURAL_HAM(-3.00)[-1.000]; BAYES_HAM(-2.99)[99.96%]; SUSPICIOUS_RECIPS(1.50)[]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; FREEMAIL_TO(0.00)[gmail.com]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; RCVD_TLS_ALL(0.00)[]; RCVD_COUNT_TWO(0.00)[2]; ARC_NA(0.00)[]; TO_DN_SOME(0.00)[]; TO_MATCH_ENVRCPT_ALL(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; TAGGED_RCPT(0.00)[]; FROM_HAS_DN(0.00)[]; FREEMAIL_ENVRCPT(0.00)[gmail.com]; RCPT_COUNT_THREE(0.00)[4]; FREEMAIL_CC(0.00)[debbugs.gnu.org,posteo.net,gmail.com] X-Rspamd-Action: no action X-Spamd-Bar: ---- X-Rspamd-Server: hera X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 55901 Cc: 55901 <at> debbugs.gnu.org, Sharlatan Hellseher <sharlatanus@HIDDEN>, Eric Bavier <bavier@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Hello Liliana, going through open science team issues, I come upon this one. Is it still of interest? If yes, could you propose an updated patch for the latest version? Otherwise I would suggest to close this issue. Andreas
guix-patches@HIDDEN:bug#55901; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 11 Jun 2022 09:49:23 +0200
Subject: [PATCH WIP] gnu: Add lis.
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* gnu/packages/maths.scm (lis): New variable.
---
gnu/packages/maths.scm | 40 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 83f0a1810b..551b58e3f6 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -934,6 +934,46 @@ (define-public lapack
(license (license:non-copyleft "file://LICENSE"
"See LICENSE in the distribution."))))
+(define-public lis
+ (package
+ (name "lis")
+ (version "2.0.34")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://www.ssisc.org/lis/dl/lis-"
+ version ".zip"))
+ (sha256
+ (base32 "0wnsvy75rcxgy0afckyr9bi4hfrk0wsqczw5az95afd9j8ymj5pj"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:configure-flags #~(list "--enable-fortran"
+ "--enable-f90"
+ "--enable-openmp"
+ "--enable-complex"
+ "--disable-sse2" ;; XXX: tuning
+ "--enable-shared")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'install 'install-doc
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (docdir (string-append out "/share/doc/lis-" #$version))
+ (mandir (string-append out "/share/man")))
+
+ (copy-recursively "doc/man" mandir)
+ ;; TODO: Build the manuals ourselves
+ (install-file "doc/lis-ug-en.pdf" docdir)
+ (install-file "doc/lis-ug-ja.pdf" docdir)))))))
+ (inputs (list openmpi))
+ (native-inputs (list gfortran unzip))
+ (home-page "https://www.ssisc.org/lis")
+ (synopsis "Solve discretized linear equations and eigenvalue problems")
+ (description "Lis is a parallel software library for solving discretized
+linear equations and eigenvalue problems that arise in the numerical solution
+of partial differential equations using iterative methods.")
+ (license license:bsd-3)))
+
(define-public clapack
(package
(name "clapack")
--
2.36.1
Liliana Marie Prikler <liliana.prikler@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#55901; Package guix-patches.
Full text available.
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