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Subject: [bug#64114] [PATCH] gnu: fftw: Update to 3.3.10 and build entirely from source.
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* gnu/packages/algebra.scm (fftw): Update to 3.3.10.
[source]: Use git checkout without autogenerated files.
[arguments]<#:configure-flags>: Use Gexps and set --enable-maintainer-mode.
<#:modules>: Add (ice-9 ftw) and (srfi srfi-26).
<#:phases>: Add phases to run the code generation and build documentation.
[native-inputs]: Add autoconf, automake, ghostscript, indent, libtool, ocaml,
ocamlbuild, ocaml-num, ocaml-findlib, texinfo and transfig.
(fftwf,fftw-openmpi)[arguments]: Use Gexps.
---
Hello,
I noticed that the FFTW release tarballs already contain the
autogenerated codelets and the built documentation. Building them of
course adds a lot more dependencies.
gnu/packages/algebra.scm | 140 +++++++++++++++++++++++++++------------
1 file changed, 98 insertions(+), 42 deletions(-)
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index 3babf90b3c..ca5831066a 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -15,6 +15,7 @@
;;; Copyright © 2020, 2021, 2023 Vinicius Monego <monego@HIDDEN>
;;; Copyright © 2021 Lars-Dominik Braun <ldb@HIDDEN>
;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@HIDDEN>
+;;; Copyright © 2023 David Elsing <david.elsing@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -38,6 +39,7 @@ (define-module (gnu packages algebra)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages check)
+ #:use-module (gnu packages code)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpp)
#:use-module (gnu packages documentation)
@@ -45,6 +47,7 @@ (define-module (gnu packages algebra)
#:use-module (gnu packages flex)
#:use-module (gnu packages fltk)
#:use-module (gnu packages gcc)
+ #:use-module (gnu packages ghostscript)
#:use-module (gnu packages gl)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages image)
@@ -63,6 +66,7 @@ (define-module (gnu packages algebra)
#:use-module (gnu packages shells)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
+ #:use-module (gnu packages xfig)
#:use-module (gnu packages xiph)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
@@ -737,39 +741,91 @@ (define-public kiss-fft-for-extempore
(define-public fftw
(package
(name "fftw")
- (version "3.3.8")
+ (version "3.3.10")
(source (origin
- (method url-fetch)
- (uri (string-append "ftp://ftp.fftw.org/pub/fftw/fftw-"
- version".tar.gz"))
- (sha256
- (base32
- "00z3k8fq561wq2khssqg0kallk0504dzlx989x3vvicjdqpjc4v1"))))
+ ;; Release tarball contains many generated files
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/FFTW/fftw3")
+ (commit (string-append "fftw-" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "11r4kd1478mi35vv6fgmg6qibqkqjhb77pqxaa8374rxdlqazgyy"))))
(build-system gnu-build-system)
(arguments
- `(#:configure-flags
- '("--enable-shared" "--enable-openmp" "--enable-threads"
- ,@(let ((system (or (%current-target-system) (%current-system))))
- ;; Enable SIMD extensions for codelets. See details at:
- ;; <http://fftw.org/fftw3_doc/Installation-on-Unix.html>.
- (cond
- ((string-prefix? "x86_64" system)
- '("--enable-sse2" "--enable-avx" "--enable-avx2"
- "--enable-avx512" "--enable-avx-128-fma"))
- ((string-prefix? "i686" system)
- '("--enable-sse2"))
- ((string-prefix? "aarch64" system)
- ;; Note that fftw supports NEON on 32-bit ARM only when
- ;; compiled for single-precision.
- '("--enable-neon"))
- (else
- '())))
- ;; By default '-mtune=native' is used. However, that may cause the
- ;; use of ISA extensions (e.g. AVX) that are not necessarily
- ;; available on the user's machine when that package is built on a
- ;; different machine.
- "ax_cv_c_flags__mtune_native=no")))
- (native-inputs (list perl))
+ (list
+ #:configure-flags
+ #~(list "--enable-shared"
+ "--enable-openmp"
+ "--enable-threads"
+ "--enable-maintainer-mode"
+ #$@(let ((system (or (%current-target-system) (%current-system))))
+ ;; Enable SIMD extensions for codelets. See details at:
+ ;; <https://fftw.org/fftw3_doc/Installation-on-Unix.html>.
+ (cond
+ ((string-prefix? "x86_64" system)
+ '("--enable-sse2" "--enable-avx" "--enable-avx2"
+ "--enable-avx512" "--enable-avx-128-fma"))
+ ((string-prefix? "i686" system)
+ '("--enable-sse2"))
+ ((string-prefix? "aarch64" system)
+ ;; Note that fftw supports NEON on 32-bit ARM only when
+ ;; compiled for single-precision.
+ '("--enable-neon"))
+ (else '())))
+ ;; By default '-mtune=native' is used. However, that may cause the
+ ;; use of ISA extensions (e.g. AVX) that are not necessarily
+ ;; available on the user's machine when that package is built on a
+ ;; different machine.
+ "ax_cv_c_flags__mtune_native=no")
+ #:modules '((ice-9 ftw)
+ (srfi srfi-26)
+ (guix build utils)
+ (guix build gnu-build-system))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-bootstrap
+ (lambda _
+ ;; This script calls configure
+ (delete-file "bootstrap.sh")
+ (invoke "touch" "ChangeLog")
+ ;; OCaml Num library
+ (substitute* "genfft/Makefile.am"
+ ((",nums")
+ " -package num"))))
+ (add-after 'build 'build-doc
+ (lambda _
+ ;; Reproducibility
+ (substitute* "doc/FAQ/m-html.pl"
+ (("- \\$html_date\\\\n") "")
+ (("\\$html_year \\$user_copyholder")
+ "2022 $user_copyholder"))
+ (substitute* "doc/FAQ/fftw-faq.bfnn"
+ ((".*`date.*") ""))
+ (invoke "make" "-C" "doc")
+ (invoke "make" "-C" "doc" "html")
+ (invoke "make" "-C" "doc/FAQ" "faq")))
+ (add-after 'install 'install-doc
+ (let ((doc (string-append #$output "/share/doc/"
+ #$name "-" #$version)))
+ (lambda _
+ (copy-recursively "doc/html" (string-append doc "/html"))
+ (copy-recursively "doc/FAQ/fftw-faq.html"
+ (string-append doc "/fftw-faq.html"))
+ (install-file "doc/FAQ/fftw-faq.ascii" doc)))))))
+ (native-inputs (list autoconf
+ automake
+ ghostscript
+ indent
+ libtool
+ ocaml
+ ocamlbuild
+ ocaml-num
+ ocaml-findlib
+ perl
+ texinfo
+ transfig))
(home-page "https://fftw.org")
(synopsis "Computing the discrete Fourier transform")
(description
@@ -785,14 +841,14 @@ (define-public fftwf
(arguments
(substitute-keyword-arguments (package-arguments fftw)
((#:configure-flags fftw-configure-flags)
- `(cons* "--enable-single"
- ,@(if (string-prefix? "arm" (or (%current-target-system)
- (%current-system)))
- ;; fftw supports NEON on 32-bit ARM only when compiled
- ;; for single-precision, so add it here.
- '("--enable-neon")
- '())
- ,fftw-configure-flags))))
+ #~(cons* "--enable-single"
+ #$@(if (string-prefix? "arm" (or (%current-target-system)
+ (%current-system)))
+ ;; fftw supports NEON on 32-bit ARM only when compiled
+ ;; for single-precision, so add it here.
+ '("--enable-neon")
+ '())
+ #$fftw-configure-flags))))
(description
(string-append (package-description fftw)
" Single-precision version."))))
@@ -806,11 +862,11 @@ (define-public fftw-openmpi
(arguments
(substitute-keyword-arguments (package-arguments fftw)
((#:configure-flags cf)
- `(cons "--enable-mpi" ,cf))
+ #~(cons "--enable-mpi" #$cf))
((#:phases phases '%standard-phases)
- `(modify-phases ,phases
- (add-before 'check 'mpi-setup
- ,%openmpi-setup)))))
+ #~(modify-phases #$phases
+ (add-before 'check 'mpi-setup
+ #$%openmpi-setup)))))
(description
(string-append (package-description fftw)
" With OpenMPI parallelism support."))))
--
2.40.1
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: David Elsing <david.elsing@HIDDEN> Subject: bug#64114: Acknowledgement ([PATCH] gnu: fftw: Update to 3.3.10 and build entirely from source.) Message-ID: <handler.64114.B.168693584227929.ack <at> debbugs.gnu.org> References: <9ae0d0f6a21a74fc0b36c52f23bbbd44b251d039.1686934712.git.david.elsing@HIDDEN> X-Gnu-PR-Message: ack 64114 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 64114 <at> debbugs.gnu.org Date: Fri, 16 Jun 2023 17:18:02 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): guix-patches@HIDDEN If you wish to submit further information on this problem, please send it to 64114 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 64114: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D64114 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
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The fftw package has been updated to 3.3.10 in the meantime, but now the
transfig package was replaced by fig2dev, which depends on fftw itself.
Therefore, I put the documentation for fftw into a separate package. It also
depends on the inputs of the fftw package, as the configure phase has to be
run again to generate the Makefiles for the documentation.
David Elsing (2):
gnu: fftw: Build entirely from source.
gnu: Add fftw-documentation.
gnu/packages/algebra.scm | 153 ++++++++++++++++++++++++++++-----------
1 file changed, 112 insertions(+), 41 deletions(-)
--
2.41.0
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* gnu/packages/algebra.scm (fftw)[source]: Use git checkout without
autogenerated files.
[arguments]<#:configure-flags>: Use Gexps and set --enable-maintainer-mode and
--disable-doc.
<#:phases>: Add 'fix-maintainer-build' phase.
[native-inputs]: Add autoconf, automake, libtool, ocaml, ocamlbuild, ocaml-num
and ocaml-findlib.
(fftwf,fftw-openmpi)[arguments]: Use Gexps.
---
gnu/packages/algebra.scm | 111 ++++++++++++++++++++++++---------------
1 file changed, 70 insertions(+), 41 deletions(-)
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index f319e260e9..dbed683bef 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -15,6 +15,7 @@
;;; Copyright © 2020, 2021, 2023 Vinicius Monego <monego@HIDDEN>
;;; Copyright © 2021 Lars-Dominik Braun <ldb@HIDDEN>
;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@HIDDEN>
+;;; Copyright © 2024 David Elsing <david.elsing@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -38,12 +39,14 @@ (define-module (gnu packages algebra)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages check)
+ #:use-module (gnu packages code)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpp)
#:use-module (gnu packages documentation)
#:use-module (gnu packages flex)
#:use-module (gnu packages fltk)
#:use-module (gnu packages gcc)
+ #:use-module (gnu packages ghostscript)
#:use-module (gnu packages gl)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages image)
@@ -63,6 +66,7 @@ (define-module (gnu packages algebra)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages text-editors)
+ #:use-module (gnu packages xfig)
#:use-module (gnu packages xiph)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
@@ -738,37 +742,62 @@ (define-public fftw
(name "fftw")
(version "3.3.10")
(source (origin
- (method url-fetch)
- (uri (string-append "ftp://ftp.fftw.org/pub/fftw/fftw-"
- version".tar.gz"))
- (sha256
- (base32
- "0rv4w90b65b2kvjpj8g9bdkl4xqc42q20f5bzpxdrkajk1a35jan"))))
+ ;; Release tarball contains many generated files
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/FFTW/fftw3")
+ (commit (string-append "fftw-" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "11r4kd1478mi35vv6fgmg6qibqkqjhb77pqxaa8374rxdlqazgyy"))))
(build-system gnu-build-system)
(arguments
- `(#:configure-flags
- '("--enable-shared" "--enable-openmp" "--enable-threads"
- ,@(let ((system (or (%current-target-system) (%current-system))))
- ;; Enable SIMD extensions for codelets. See details at:
- ;; <http://fftw.org/fftw3_doc/Installation-on-Unix.html>.
- (cond
- ((string-prefix? "x86_64" system)
- '("--enable-sse2" "--enable-avx" "--enable-avx2"
- "--enable-avx512" "--enable-avx-128-fma"))
- ((string-prefix? "i686" system)
- '("--enable-sse2"))
- ((string-prefix? "aarch64" system)
- ;; Note that fftw supports NEON on 32-bit ARM only when
- ;; compiled for single-precision.
- '("--enable-neon"))
- (else
- '())))
- ;; By default '-mtune=native' is used. However, that may cause the
- ;; use of ISA extensions (e.g. AVX) that are not necessarily
- ;; available on the user's machine when that package is built on a
- ;; different machine.
- "ax_cv_c_flags__mtune_native=no")))
- (native-inputs (list perl))
+ (list
+ #:configure-flags
+ #~(list "--enable-shared"
+ "--enable-openmp"
+ "--enable-threads"
+ "--enable-maintainer-mode"
+ "--disable-doc"
+ #$@(let ((system (or (%current-target-system) (%current-system))))
+ ;; Enable SIMD extensions for codelets. See details at:
+ ;; <https://fftw.org/fftw3_doc/Installation-on-Unix.html>.
+ (cond
+ ((string-prefix? "x86_64" system)
+ '("--enable-sse2" "--enable-avx" "--enable-avx2"
+ "--enable-avx512" "--enable-avx-128-fma"))
+ ((string-prefix? "i686" system)
+ '("--enable-sse2"))
+ ((string-prefix? "aarch64" system)
+ ;; Note that fftw supports NEON on 32-bit ARM only when
+ ;; compiled for single-precision.
+ '("--enable-neon"))
+ (else '())))
+ ;; By default '-mtune=native' is used. However, that may cause the
+ ;; use of ISA extensions (e.g. AVX) that are not necessarily
+ ;; available on the user's machine when that package is built on a
+ ;; different machine.
+ "ax_cv_c_flags__mtune_native=no")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-maintainer-build
+ (lambda _
+ ;; This script calls configure
+ (delete-file "bootstrap.sh")
+ (invoke "touch" "ChangeLog")
+ ;; OCaml Num library
+ (substitute* "genfft/Makefile.am"
+ ((",nums")
+ " -package num")))))))
+ (native-inputs (list autoconf
+ automake
+ libtool
+ ocaml
+ ocamlbuild
+ ocaml-num
+ ocaml-findlib
+ perl))
(home-page "https://fftw.org")
(synopsis "Computing the discrete Fourier transform")
(description
@@ -784,14 +813,14 @@ (define-public fftwf
(arguments
(substitute-keyword-arguments (package-arguments fftw)
((#:configure-flags fftw-configure-flags)
- `(cons* "--enable-single"
- ,@(if (string-prefix? "arm" (or (%current-target-system)
- (%current-system)))
- ;; fftw supports NEON on 32-bit ARM only when compiled
- ;; for single-precision, so add it here.
- '("--enable-neon")
- '())
- ,fftw-configure-flags))))
+ #~(cons* "--enable-single"
+ #$@(if (string-prefix? "arm" (or (%current-target-system)
+ (%current-system)))
+ ;; fftw supports NEON on 32-bit ARM only when compiled
+ ;; for single-precision, so add it here.
+ '("--enable-neon")
+ '())
+ #$fftw-configure-flags))))
(description
(string-append (package-description fftw)
" Single-precision version."))))
@@ -805,11 +834,11 @@ (define-public fftw-openmpi
(arguments
(substitute-keyword-arguments (package-arguments fftw)
((#:configure-flags cf)
- `(cons "--enable-mpi" ,cf))
+ #~(cons "--enable-mpi" #$cf))
((#:phases phases '%standard-phases)
- `(modify-phases ,phases
- (add-before 'check 'mpi-setup
- ,%openmpi-setup)))))
+ #~(modify-phases #$phases
+ (add-before 'check 'mpi-setup
+ #$%openmpi-setup)))))
(description
(string-append (package-description fftw)
" With OpenMPI parallelism support."))))
--
2.41.0
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* gnu/packages/algebra.scm (fftw-documentation): New variable.
---
gnu/packages/algebra.scm | 42 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index dbed683bef..1b2694400d 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -807,6 +807,48 @@ (define-public fftw
cosine/ sine transforms or DCT/DST).")
(license license:gpl2+)))
+;; Separate package to prevent dependency cycle
+(define-public fftw-documentation
+ (package/inherit fftw
+ (name "fftw-documentation")
+ (arguments
+ (substitute-keyword-arguments (package-arguments fftw)
+ ((#:tests? _ #f) #f)
+ ((#:phases phases '%standard-phases)
+ #~(modify-phases #$phases
+ (replace 'build
+ (lambda _
+ ;; Reproducibility
+ (substitute* "doc/FAQ/m-html.pl"
+ (("- \\$html_date\\\\n") "")
+ (("\\$html_year \\$user_copyholder")
+ "2021 $user_copyholder"))
+ (substitute* "doc/FAQ/fftw-faq.bfnn"
+ ((".*`date.*") ""))
+ (invoke "make" "-C" "doc")
+ (invoke "make" "-C" "doc" "html")
+ (invoke "make" "-C" "doc/FAQ" "faq")))
+ (replace 'install
+ (let ((doc (string-append #$output "/share/doc/"
+ #$(package-name this-package) "-"
+ #$(package-version this-package))))
+ (lambda _
+ (copy-recursively "doc/html" (string-append doc "/html"))
+ (copy-recursively "doc/FAQ/fftw-faq.html"
+ (string-append doc "/fftw-faq.html"))
+ (install-file "doc/FAQ/fftw-faq.ascii" doc))))))))
+ (native-inputs
+ (modify-inputs (package-native-inputs fftw)
+ (prepend ghostscript texinfo fig2dev)))
+ (home-page "https://fftw.org")
+ (synopsis "Computing the discrete Fourier transform")
+ (description
+ "FFTW is a C subroutine library for computing the discrete Fourier
+transform (DFT) in one or more dimensions, of arbitrary input size, and of
+both real and complex data (as well as of even/odd data---i.e. the discrete
+cosine/ sine transforms or DCT/DST).")
+ (license license:gpl2+)))
+
(define-public fftwf
(package/inherit fftw
(name "fftwf")
--
2.41.0
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Hello David,
I happened to come along your patch and examined the situation. It turns out
that the fftw version has already been updated to 3.3.10.
Unfortunately, lots of packages depend on it, so changing the package will
be quite costly. Maybe it would make sense to close the bug for now (or let
it wait) and come back to it when a new version of fftw comes out?
Andreas
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From: David Elsing <david.elsing@HIDDEN>
In-Reply-To: <Z0C-eGdT0T_gLdpd@jurong>
References: <Z0C-eGdT0T_gLdpd@jurong>
Date: Tue, 07 Jan 2025 20:36:27 +0000
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Hello Andreas,
sorry, I didn't see your reply before.
Andreas Enge <andreas@HIDDEN> writes:
> I happened to come along your patch and examined the situation. It turns out
> that the fftw version has already been updated to 3.3.10.
>
> Unfortunately, lots of packages depend on it, so changing the package will
> be quite costly. Maybe it would make sense to close the bug for now (or let
> it wait) and come back to it when a new version of fftw comes out?
FFTW isn't very actively developed, so it might take a while until there
is a new release. I think it makes sense to leave the bug open until
someone applies it when a dependency for fftw is updated (e.g. in
core-updates).
Do you think I should send updated patches rebased to master or would
this just unnecessarily occupy QA?
Best,
David
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