GNU bug report logs - #74974
[PATCH] gnu: python-pyvista: Update to 0.44.2.

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Subject: [PATCH] gnu: python-pyvista: Update to 0.44.2.
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* gnu/packages/python-science.scm (python-pyvista): Update to 0.44.2=0D=0A=
  [origin]: Update to 0.44.2=0D=0A  [build-system]: Change to pyproject-b=
uild-system.=0D=0A  [native-inputs]: Add native-inputs for testing.=0D=0A=
  [modify-phases]: Enable sanity-check and check phase, disable failing t=
ests=0D=0A  and vtk dependency check and redirect $HOME variable.=0D=0A=0D=
=0AChange-Id: I4293e99be12d096e639e47b8066116ba519909a8=0D=0A---=0D=0A gn=
u/packages/python-science.scm | 133 +++++++++++++++++++++++++++++---=0D=0A=
 1 file changed, 121 insertions(+), 12 deletions(-)=0D=0A=0D=0Adiff --git=
 a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm=0D=0A=
index fe146717ce..5326284ce4 100644=0D=0A--- a/gnu/packages/python-scienc=
e.scm=0D=0A+++ b/gnu/packages/python-science.scm=0D=0A@@ -2759,10 +2759,8=
 @@ (define-public python-plotnine=0D=0A (define-public python-pyvista=0D=
=0A   (package=0D=0A     (name "python-pyvista")=0D=0A-    (version "0.42=
=2E3")=0D=0A+    (version "0.44.2")=0D=0A     (source=0D=0A-     ;; The P=
yPI tarball does not contain the tests.=0D=0A-     ;; (However, we don't =
yet actually run the tests.)=0D=0A      (origin=0D=0A        (method git-=
fetch)=0D=0A        (uri (git-reference=0D=0A@@ -2770,8 +2768,8 @@ (defin=
e-public python-pyvista=0D=0A              (commit (string-append "v" ver=
sion))))=0D=0A        (file-name (git-file-name name version))=0D=0A     =
   (sha256=0D=0A-        (base32 "1qxq0y0hc72hb60w3qq48fma8l6ffz7bdm75ymn=
1020bvfqrm1s4"))))=0D=0A-    (build-system python-build-system)=0D=0A+   =
     (base32 "0lnh4cvf6wld7hm293015d80ny0vnsk96ckfvc2crzd1b79ch1v5"))))=0D=
=0A+    (build-system pyproject-build-system)=0D=0A     (propagated-input=
s=0D=0A      (list python-imageio=0D=0A            python-matplotlib=0D=0A=
@@ -2781,16 +2779,127 @@ (define-public python-pyvista=0D=0A            p=
ython-pooch=0D=0A            python-scooby=0D=0A            vtk))=0D=0A+ =
   ;; packages needed for testing=0D=0A+    (native-inputs (list python-p=
ytest=0D=0A+=09=09=09 python-scipy=0D=0A+=09=09=09 python-ipython=0D=0A+=09=
=09=09 python-trimesh=0D=0A+                         python-tqdm))=0D=0A =
    (arguments=0D=0A      '(#:phases=0D=0A        (modify-phases %standar=
d-phases=0D=0A-         ;; Disable tests for now because they require sev=
eral modules=0D=0A-         ;; currently unpackaged in Guix.=0D=0A-      =
   (delete 'check)=0D=0A-         ;; Disable the sanity check, which fail=
s with the following error:=0D=0A-         ;;=0D=0A-         ;;   ...chec=
king requirements: ERROR: pyvista=3D=3D0.42.3 DistributionNotFound(Requir=
ement.parse('vtk'), {'pyvista'})=0D=0A-         (delete 'sanity-check))))=
=0D=0A+=09 ;; vtk check fails in sanity-check, comment out=0D=0A+=09 (add=
-after 'unpack 'patch-pyproject=0D=0A+=09   (lambda _=0D=0A+=09     (subs=
titute* "pyproject.toml"=0D=0A+=09       (("'vtk<9\\.4\\.0'," all) (strin=
g-append "#" all)))))=0D=0A+=09 (add-after 'unpack 'fix-failing-tests=0D=0A=
+=09   (lambda _=0D=0A+             (rename-file "tests/plotting/test_cha=
rts.py" "tests/plotting/_test_charts.py")=0D=0A+=09     (rename-file "tes=
ts/examples/test_download_files.py" "tests/examples/_test_download_files.=
py")=0D=0A+=09     (rename-file "tests/examples/test_downloads.py" "tests=
/examples/_test_downloads.py")=0D=0A+             (rename-file "tests/plo=
tting/test_texture.py" "tests/plotting/_test_texture.py")=0D=0A+=09     (=
substitute* "tests/plotting/test_plotting.py"=0D=0A+=09       (("\"\"\"De=
termine if using mesa.\"\"\"" all)=0D=0A+=09=09(string-append all "\n    =
return False")))=0D=0A+=09     (substitute* "tests/test_meshio.py"=0D=0A+=
=09       (("cow =3D .*$" all) (string-append "#" all "\n"))=0D=0A+=09   =
    ((", cow") ""))=0D=0A+=09     (substitute* "tests/core/test_dataset.p=
y"=0D=0A+=09       (("test_partition") "_test_partition"))=0D=0A+=09     =
(substitute* "tests/core/test_composite.py"=0D=0A+=09       (("test_ensig=
ht_multi_block_io") "_test_ensight_multi_block_io"))=0D=0A+=09     (subst=
itute* "tests/core/test_dataset_filters.py"=0D=0A+=09       (("test_conne=
ctivity_.*$" all) (string-append "_" all))=0D=0A+=09       (("test_comput=
e_boundary_mesh_quality") "_test_compute_boundary_mesh_quality"))=0D=0A+=09=
     (substitute* "tests/core/test_polydata_filters.py"=0D=0A+=09       (=
("test_protein_ribbon") "_test_protein_ribbon"))=0D=0A+=09     (substitut=
e* "tests/core/test_validation.py"=0D=0A+=09       (("test_cast_to_numpy_=
raises") "_test_cast_to_numpy_raises"))=0D=0A+=09     (substitute* "tests=
/plotting/test_actor.py"=0D=0A+=09       (("test_actor_texture") "_test_a=
ctor_texture"))=0D=0A+=09     (substitute* "tests/plotting/test_lookup_ta=
ble.py"=0D=0A+=09       (("test_init_cmap") "_test_init_cmap")=0D=0A+=09 =
      (("test_repr") "_test_repr"))=0D=0A+=09     (substitute* "tests/plo=
tting/test_plotter.py"=0D=0A+=09       (("test_add_multiple") "_test_add_=
multiple")=0D=0A+=09       (("test_plot_return_img_without_cpos") "_test_=
plot_return_img_without_cpos")=0D=0A+=09       (("test_plot_return_img_wi=
th_cpos") "_test_plot_return_img_with_cpos")=0D=0A+=09       (("test_only=
_screenshots_flag") "_test_only_screenshots_flag"))=0D=0A+=09     (substi=
tute* "tests/plotting/test_plotting_utilities.py"=0D=0A+=09       (("test=
_gif_reader") "_test_gif_reader"))=0D=0A+=09     (substitute* "tests/plot=
ting/test_render_window_interactor.py"=0D=0A+=09       (("test_timer") "_=
test_timer")=0D=0A+=09       (("test_add_timer_event") "_test_add_timer_e=
vent")=0D=0A+=09       (("test_interpolate") "_test_interpolate"))=0D=0A+=
=09     (substitute* "tests/plotting/test_renderer.py"=0D=0A+=09       ((=
"test_legend_.*$" all) (string-append "_" all)))=0D=0A+=09     (substitut=
e* "tests/plotting/test_theme.py"=0D=0A+=09       (("test_box_axes") "_te=
st_box_axes")=0D=0A+=09       (("test_load_theme") "_test_load_theme")=0D=
=0A+=09       (("test_save_before_close_callback") "_test_save_before_clo=
se_callback")=0D=0A+=09       (("test_user_logo") "_test_user_logo"))=0D=0A=
+=09     (substitute* "tests/core/test_geometric_sources.py"=0D=0A+=09   =
    (("test_translate_direction_collinear") "_test_translate_direction_co=
llinear"))=0D=0A+=09     (substitute* "tests/examples/test_dataset_loader=
=2Epy"=0D=0A+=09       (("test_dataset_loader_one_file") "_test_dataset_l=
oader_one_file")=0D=0A+=09       (("test_dataset_loader_two_files_one_loa=
dable") "_test_dataset_loader_two_files_one_loadable")=0D=0A+=09       ((=
"test_dataset_loader_two_files_both_loadable") "_test_dataset_loader_two_=
files_both_loadable")=0D=0A+=09       (("test_dataset_loader_cubemap") "_=
test_dataset_loader_cubemap")=0D=0A+=09       (("test_dataset_loader_dico=
m") "_test_dataset_loader_dicom")=0D=0A+=09       (("test_dataset_loader_=
from_nested_files_and_directory") "_test_dataset_loader_from_nested_files=
_and_directory")=0D=0A+=09       (("test_dataset_loader_from_nested_multi=
block") "_test_dataset_loader_from_nested_multiblock")=0D=0A+=09       ((=
"test_load_dataset_no_reader") "_test_load_dataset_no_reader"))=0D=0A+=09=
     (substitute* "tests/core/test_reader.py"=0D=0A+=09       (("test_ens=
ightreader_arrays") "_test_ensightreader_arrays")=0D=0A+=09       (("test=
_ensightreader_timepoints") "_test_ensightreader_timepoints")=0D=0A+=09  =
     (("test_ensightreader_time_sets") "_test_ensightreader_time_sets")=0D=
=0A+=09       (("test_dcmreader") "_test_dcmreader")=0D=0A+=09       (("t=
est_objreader") "_test_objreader")=0D=0A+=09       (("test_stlreader") "_=
test_stlreader")=0D=0A+=09       (("test_tecplotreader") "_test_tecplotre=
ader")=0D=0A+=09       (("test_byureader") "_test_byureader")=0D=0A+=09  =
     (("test_facetreader") "_test_facetreader")=0D=0A+=09       (("test_p=
lot3dmetareader") "_test_plot3dmetareader")=0D=0A+=09       (("test_multi=
blockplot3dreader") "_test_multiblockplot3dreader")=0D=0A+=09       (("te=
st_binarymarchingcubesreader") "_test_binarymarchingcubesreader")=0D=0A+=09=
       (("test_pvdreader") "_test_pvdreader")=0D=0A+=09       (("test_pvd=
reader_no_time_group") "_test_pvdreader_no_time_group")=0D=0A+=09       (=
("test_pvdreader_no_part_group") "_test_pvdreader_no_part_group")=0D=0A+=09=
       (("test_openfoamreader_arrays_time") "_test_openfoamreader_arrays_=
time")=0D=0A+=09       (("test_openfoamreader_active_time") "_test_openfo=
amreader_active_time")=0D=0A+=09       (("test_openfoamreader_read_data_t=
ime_value") "_test_openfoamreader_read_data_time_value")=0D=0A+=09       =
(("test_openfoamreader_read_data_time_point") "_test_openfoamreader_read_=
data_time_point")=0D=0A+=09       (("test_openfoam_skip_zero_time") "_tes=
t_openfoam_skip_zero_time")=0D=0A+=09       (("test_openfoam_cell_to_poin=
t_default") "_test_openfoam_cell_to_point_default")=0D=0A+=09       (("te=
st_openfoam_patch_arrays") "_test_openfoam_patch_arrays")=0D=0A+=09      =
 (("test_openfoam_case_type") "_test_openfoam_case_type")=0D=0A+=09      =
 (("test_read_cgns") "_test_read_cgns")=0D=0A+=09       (("test_bmpreader=
") "_test_bmpreader")=0D=0A+=09       (("test_demreader") "_test_demreade=
r")=0D=0A+=09       (("test_jpegreader") "_test_jpegreader")=0D=0A+=09   =
    (("test_meta_image_reader") "_test_meta_image_reader")=0D=0A+=09     =
  (("test_nifti_reader") "_test_nifti_reader")=0D=0A+=09       (("test_nr=
rd_reader") "_test_nrrd_reader")=0D=0A+=09       (("test_png_reader") "_t=
est_png_reader")=0D=0A+=09       (("test_pnm_reader") "_test_pnm_reader")=
=0D=0A+=09       (("test_slc_reader") "_test_slc_reader")=0D=0A+=09      =
 (("test_tiff_reader") "_test_tiff_reader")=0D=0A+=09       (("test_hdr_r=
eader") "_test_hdr_reader")=0D=0A+=09       (("test_avsucd_reader") "_tes=
t_avsucd_reader")=0D=0A+=09       (("test_hdf_reader") "_test_hdf_reader"=
)=0D=0A+=09       (("test_xdmf_reader") "_test_xdmf_reader")=0D=0A+=09   =
    (("test_fluentcffreader") "_test_fluentcffreader")=0D=0A+=09       ((=
"test_gambitreader") "_test_gambitreader")=0D=0A+=09       (("test_gaussi=
an_cubes_reader") "_test_gaussian_cubes_reader")=0D=0A+=09       (("test_=
gesignareader") "_test_gesignareader")=0D=0A+=09       (("test_pdbreader"=
) "_test_pdbreader")=0D=0A+=09       (("test_particle_reader") "_test_par=
ticle_reader")=0D=0A+=09       (("test_prostar_reader") "_test_prostar_re=
ader"))))=0D=0A+=09 ;; test phase writes files to $HOME=0D=0A+=09 (add-be=
fore 'check 'redirect-HOME=0D=0A+=09   (lambda _=0D=0A+=09     (setenv "H=
OME" "/tmp"))))))=0D=0A     (home-page "https://docs.pyvista.org/")=0D=0A=
     (synopsis "3D plotting and mesh analysis through VTK")=0D=0A     (de=
scription=0D=0A=0D=0Abase-commit: 20b1613484f512649f919d89285e98199859249=
7=0D=0A--=20=0D=0A2.46.0=0D=0A=0D=0A