Received: (at 76240) by debbugs.gnu.org; 21 Feb 2025 11:26:39 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Feb 21 06:26:38 2025 Received: from localhost ([127.0.0.1]:55199 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1tlRB0-0006lH-9C for submit <at> debbugs.gnu.org; Fri, 21 Feb 2025 06:26:38 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:54722) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1tlRAy-0006kK-Dy for 76240 <at> debbugs.gnu.org; Fri, 21 Feb 2025 06:26:37 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1tlRAq-0007lB-No; Fri, 21 Feb 2025 06:26:28 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=7EymA4F6p5Cx55pjMDhxSt6/6OMCHssaSh8q40iwMmY=; b=bbcrbOTiNchy9Yw4RqZZ f6SW0O2DD8I4BCS07qcW6vf45ccx6xpLHjw+ucD5yIBd4F6De8RYoIx2hInPU1IBlVNySP6qnIaX1 lmuYekSjagZFRbNmWlYzE7LS7gXI8da2WpZCdrAmPu8utabTCvJeWzOmGT7Xi/qyywUBgskQgCnkm u7iSfGDEphEEZR+JMp96aelpS3voqLDh7gs8P3UDXQc4AJcX9iwgYO4BA7CS7e+4D45mhiWkW9Fpe 7r9kxgsCAZeY8/pJ/MWe87lD9dzcDKyi0i4Dna22PeD8EKVbeOLCBhiZqP6+pG9WRy3Ogcn0OUuAS iE362CVS7T1CvQ==; From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Sharlatan Hellseher <sharlatanus@HIDDEN> Subject: Re: [bug#76240] [PATCH] gnu: Add NumPy 2 related variants. In-Reply-To: <878qq8znp8.fsf@HIDDEN> ("Ludovic =?utf-8?Q?Court=C3=A8s=22'?= =?utf-8?Q?s?= message of "Fri, 14 Feb 2025 13:59:47 +0100") References: <e2de75ba2392dbb0aa6021befea7d9a6b8c17959.1739393772.git.sharlatanus@HIDDEN> <878qq8znp8.fsf@HIDDEN> Date: Fri, 21 Feb 2025 12:26:26 +0100 Message-ID: <87msef8rod.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 76240 Cc: Tanguy Le Carrour <tanguy@HIDDEN>, Munyoki Kilyungi <me@HIDDEN>, Lars-Dominik Braun <lars@HIDDEN>, 76240 <at> debbugs.gnu.org, jgart <jgart@HIDDEN>, Marius Bakke <marius@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Hey Oleg, Ludovic Court=C3=A8s <ludo@HIDDEN> skribis: > Sharlatan Hellseher <sharlatanus@HIDDEN> skribis: > >> This to make Pandas, MatplotLib and SciPy compatible with NumPy 2. They >> need to be build with newer version otherwise it raise the error. >> >> * gnu/packages/python-science.scm: (python-pandas-with-numpy-2, >> python-scipy-with-numpy-2): New variables. >> >> * gnu/packages/python-xyz.scm (python-matplotlib-with-numpy-2): New vari= able. >> >> Change-Id: I53878b643ea6f7b35e3d893a18da438c2c111c52 > > [...] > >> +(define-public python-scipy-with-numpy-2 >> + (package >> + (inherit python-scipy) >> + (propagated-inputs > > Comment for all of these: it should be =E2=80=98package/inherit=E2=80=99 = (to potentially > inherit replacements) and also change the =E2=80=98name=E2=80=99 field to= distinguish > it. > > Actually, assuming we want to move to NumPy 2.x going forward, I would > suggest keeping the regular name for the -with-numpy-2 variants (like > =E2=80=9Cpython-scipy=E2=80=9D) and choose a different name for the NumPy= 1.x variants > (like =E2=80=9Cpython-scipy-with-numpy-1=E2=80=9D). > > That way, somebody running: > > guix shell python python-numpy python-scipy This broke =E2=80=98tests/guix-pack-relocatable.sh=E2=80=99 for these reaso= ns: --8<---------------cut here---------------start------------->8--- + guix pack -RR python-numpy python-scipy --no-grafts -n guix pack: error: profile contains conflicting entries for python-numpy guix pack: error: first entry: python-numpy@HIDDEN /gnu/store/i1g6wbcc0ilh= cc5vy4pi70z58gk1716f-python-numpy-2.2.2R guix pack: error: second entry: python-numpy@HIDDEN /gnu/store/2s1jala0jg= 56drh4hc19mrdg6w3gswhm-python-numpy-1.24.4R guix pack: error: ... propagated from python-pythran@HIDDEN guix pack: error: ... propagated from python-scipy@HIDDEN hint: Backtrace: --8<---------------cut here---------------end--------------->8--- Would be nice to address it before we get a deluge of angry bug reports. :-) Ludo=E2=80=99.
guix-patches@HIDDEN
:bug#76240
; Package guix-patches
.
Full text available.Received: (at 76240) by debbugs.gnu.org; 14 Feb 2025 13:00:37 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Feb 14 08:00:37 2025 Received: from localhost ([127.0.0.1]:47532 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1tivJ6-0008VB-S5 for submit <at> debbugs.gnu.org; Fri, 14 Feb 2025 08:00:37 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:33012) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1tivJ4-0008Up-EN for 76240 <at> debbugs.gnu.org; Fri, 14 Feb 2025 08:00:35 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1tivIw-0001Dz-W3; Fri, 14 Feb 2025 08:00:27 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=e6K7T7XnHdAsJW2hdYqgYV/an0xXlIKlMwOmJbln8lc=; b=aOQ4hZWODGRP8kzetYwH QJKYm1GOoTDdM7LmamwKNA9tEJY3DzU/lNqYd49/C/AaB7RppWjOYDo+R4ddSRaaAD+reWqFgw6RH yw7Ufi1I73RuO0Z8onvuFh6IP3B8ymxnIu/1nog3JsJZSoO3ws3+24cOB8Gf+qYpzXuricefKXWom jFa0sE4YVZ/voJRwQg6wjRzMpJw41NiQhaM6qWS2qejMlYaWoH5tIJrcAD6kjgzVikzbKw5J/fZ2k V96opaQAcc/ACVY9GIj8Md+pQJzr2fvlHzD9MWHi5VKMTx0+MXshWpGYLfxB2MS99tel+4ksg2uyv adO/b+oL9gClfg==; From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Sharlatan Hellseher <sharlatanus@HIDDEN> Subject: Re: [bug#76240] [PATCH] gnu: Add NumPy 2 related variants. In-Reply-To: <e2de75ba2392dbb0aa6021befea7d9a6b8c17959.1739393772.git.sharlatanus@HIDDEN> (Sharlatan Hellseher's message of "Wed, 12 Feb 2025 20:58:39 +0000") References: <e2de75ba2392dbb0aa6021befea7d9a6b8c17959.1739393772.git.sharlatanus@HIDDEN> Date: Fri, 14 Feb 2025 13:59:47 +0100 Message-ID: <878qq8znp8.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 76240 Cc: Tanguy Le Carrour <tanguy@HIDDEN>, Munyoki Kilyungi <me@HIDDEN>, Lars-Dominik Braun <lars@HIDDEN>, 76240 <at> debbugs.gnu.org, jgart <jgart@HIDDEN>, Marius Bakke <marius@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Hi! Sharlatan Hellseher <sharlatanus@HIDDEN> skribis: > This to make Pandas, MatplotLib and SciPy compatible with NumPy 2. They > need to be build with newer version otherwise it raise the error. > > * gnu/packages/python-science.scm: (python-pandas-with-numpy-2, > python-scipy-with-numpy-2): New variables. > > * gnu/packages/python-xyz.scm (python-matplotlib-with-numpy-2): New varia= ble. > > Change-Id: I53878b643ea6f7b35e3d893a18da438c2c111c52 [...] > +(define-public python-scipy-with-numpy-2 > + (package > + (inherit python-scipy) > + (propagated-inputs Comment for all of these: it should be =E2=80=98package/inherit=E2=80=99 (t= o potentially inherit replacements) and also change the =E2=80=98name=E2=80=99 field to d= istinguish it. Actually, assuming we want to move to NumPy 2.x going forward, I would suggest keeping the regular name for the -with-numpy-2 variants (like =E2=80=9Cpython-scipy=E2=80=9D) and choose a different name for the NumPy 1= .x variants (like =E2=80=9Cpython-scipy-with-numpy-1=E2=80=9D). That way, somebody running: guix shell python python-numpy python-scipy will still get a consistent package set. How does that sound? Thanks, Ludo=E2=80=99.
guix-patches@HIDDEN
:bug#76240
; Package guix-patches
.
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[86.8.111.200]) by smtp.gmail.com with ESMTPSA id 5b1f17b1804b1-4395a06d1f2sm29949295e9.18.2025.02.12.12.58.42 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 12 Feb 2025 12:58:43 -0800 (PST) From: Sharlatan Hellseher <sharlatanus@HIDDEN> To: guix-patches@HIDDEN Subject: [PATCH] gnu: Add NumPy 2 related variants. Date: Wed, 12 Feb 2025 20:58:39 +0000 Message-ID: <e2de75ba2392dbb0aa6021befea7d9a6b8c17959.1739393772.git.sharlatanus@HIDDEN> X-Mailer: git-send-email 2.47.1 MIME-Version: 1.0 X-Debbugs-Cc: Lars-Dominik Braun <lars@HIDDEN>, Marius Bakke <marius@HIDDEN>, Munyoki Kilyungi <me@HIDDEN>, Sharlatan Hellseher <sharlatanus@HIDDEN>, Tanguy Le Carrour <tanguy@HIDDEN>, jgart <jgart@HIDDEN> Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a00:1450:4864:20::434; envelope-from=sharlatanus@HIDDEN; helo=mail-wr1-x434.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit Cc: Sharlatan Hellseher <sharlatanus@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.0 (/) This to make Pandas, MatplotLib and SciPy compatible with NumPy 2. They need to be build with newer version otherwise it raise the error. * gnu/packages/python-science.scm: (python-pandas-with-numpy-2, python-scipy-with-numpy-2): New variables. * gnu/packages/python-xyz.scm (python-matplotlib-with-numpy-2): New variable. Change-Id: I53878b643ea6f7b35e3d893a18da438c2c111c52 --- gnu/packages/python-science.scm | 19 +++++++++++++++++++ gnu/packages/python-xyz.scm | 21 +++++++++++++++++++++ 2 files changed, 40 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 1f4cdb239a1..0332546d22d 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -475,6 +475,14 @@ (define-public python-scipy routines such as routines for numerical integration and optimization.") (license license:bsd-3))) +(define-public python-scipy-with-numpy-2 + (package + (inherit python-scipy) + (propagated-inputs + (modify-inputs (package-propagated-inputs python-scipy) + (replace "python-numpy" python-numpy-2) + (replace "python-matplotlib" python-matplotlib-with-numpy-2))))) + (define-public python-scikit-allel (package (name "python-scikit-allel") @@ -1479,6 +1487,17 @@ (define-public python-pandas-2 (define-public python-pandas python-pandas-2) +(define-public python-pandas-with-numpy-2 + (package + (inherit python-pandas) + (native-inputs + (modify-inputs (package-native-inputs python-pandas) + (replace "python-numpy" python-numpy-2) + (replace "python-matplotlib" python-matplotlib-with-numpy-2))) + (propagated-inputs + (modify-inputs (package-propagated-inputs python-pandas) + (replace "python-matplotlib" python-matplotlib-with-numpy-2))))) + (define-public python-pandas-stubs (package (name "python-pandas-stubs") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index a4017fffe48..1fc6ebdb0b4 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -10462,6 +10462,27 @@ (define-public python-matplotlib toolkits.") (license license:psfl))) +(define-public python-matplotlib-with-numpy-2 + (package + (inherit python-matplotlib) + (version "3.8.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "matplotlib" version)) + (sha256 + (base32 "1spzglb3hh3959z72iwspm9dsbf5zz2q3hri1sb5ihcybrykkb4a")))) + (arguments + (substitute-keyword-arguments + (package-arguments python-matplotlib) + ((#:tests? _ #t) #f) + ((#:phases phases #~%standard-phases) + #~(modify-phases #$phases + (delete 'sanity-check))))) + (propagated-inputs + (modify-inputs (package-propagated-inputs python-matplotlib) + (replace "python-numpy" python-numpy-2))))) + (define-public python-matplotlib-documentation (package (inherit python-matplotlib) base-commit: c9abfacd9f58f7365668b67a8125640b7497932a prerequisite-patch-id: a2254ccef49d23b75149b22b200b6156097b673f prerequisite-patch-id: 4e4a0833f7c017f2922344883800161335290814 prerequisite-patch-id: 97653359db283a3832359fc4cd0dc1741a2f51bc prerequisite-patch-id: 2eac1b43f9e9050e8467c89cd384da43bff63305 -- 2.47.1
Sharlatan Hellseher <sharlatanus@HIDDEN>
:lars@HIDDEN, marius@HIDDEN, me@HIDDEN, sharlatanus@HIDDEN, tanguy@HIDDEN, jgart@HIDDEN, guix-patches@HIDDEN
.
Full text available.lars@HIDDEN, marius@HIDDEN, me@HIDDEN, sharlatanus@HIDDEN, tanguy@HIDDEN, jgart@HIDDEN, guix-patches@HIDDEN
:bug#76240
; Package guix-patches
.
Full text available.
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Copyright (C) 1999 Darren O. Benham,
1997 nCipher Corporation Ltd,
1994-97 Ian Jackson.