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From: Lars Bilke <lars.bilke@HIDDEN>
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* gnu/packages/image-processing.scm (vtk): Update to 9.4.1.
Change-Id: Ife39df610c4487683a5c8d72b60eb750530c1358
---
gnu/packages/image-processing.scm | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index 20e188bd70..cf29bf22f5 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -323,7 +323,7 @@ (define-public opencolorio
(define-public vtk
(package
(name "vtk")
- (version "9.3.0")
+ (version "9.4.1")
(source (origin
(method url-fetch)
(uri (string-append "https://vtk.org/files/release/"
@@ -331,7 +331,7 @@ (define-public vtk
"/VTK-" version ".tar.gz"))
(sha256
(base32
- "1s8vd34nhrgnw1bf9zhfn062d53fwq3csjfwvm7lxcr5a8lvkizx"))
+ "0aa5pkw2xxzksl48ldbj3cq6r4y4mxvcpl66f64gkah2s34b0ly2"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -341,7 +341,7 @@ (define-public vtk
(string-append "ThirdParty/" dir "/vtk" dir)))
;; pugixml depended upon unconditionally
'("doubleconversion" "eigen" "expat" "freetype" "gl2ps"
- "glew" "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
+ "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
"libxml2" "lz4" "netcdf" "ogg" "png" "sqlite" "theora"
"tiff" "zlib"))
(substitute* "IO/ExportPDF/vtkPDFContextDevice2D.cxx"
@@ -360,7 +360,6 @@ (define-public vtk
"-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
- "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
@@ -380,7 +379,7 @@ (define-public vtk
"-DVTK_WRAP_PYTHON=ON"
"-DVTK_PYTHON_VERSION:STRING=3"
- "-DVTK_SMP_ENABLE_OPENNMP=ON"
+ "-DVTK_SMP_ENABLE_OPENMP=ON"
"-DVTK_SMP_ENABLE_TBB=ON"
"-DVTK_USE_MPI=ON"
#$@(if (target-riscv64?)
base-commit: bcce7f8fa8b821b76591b297f61d473c5972e397
--
2.46.1
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: Lars Bilke <lars.bilke@HIDDEN> Subject: bug#76269: Acknowledgement ([PATCH] gnu: vtk: Update to 9.4.1) Message-ID: <handler.76269.B.173945753421832.ack <at> debbugs.gnu.org> References: <e34dff8f8d9c329b0d79cbb6290962579dedb073.1739457494.git.lars.bilke@HIDDEN> X-Gnu-PR-Message: ack 76269 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 76269 <at> debbugs.gnu.org Date: Thu, 13 Feb 2025 14:39:02 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): guix-patches@HIDDEN If you wish to submit further information on this problem, please send it to 76269 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 76269: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D76269 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
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Subject: [bug#76269] [PATCH] gnu: vtk: Update to 9.4.1
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(Lars Bilke's message of "Thu, 13 Feb 2025 15:38:14 +0100")
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Hi Lars,
Lars Bilke <lars.bilke@HIDDEN> skribis:
> * gnu/packages/image-processing.scm (vtk): Update to 9.4.1.
>
> Change-Id: Ife39df610c4487683a5c8d72b60eb750530c1358
Apparently this breaks at least freecad:
--8<---------------cut here---------------start------------->8---
cd /tmp/guix-build-freecad-1.0.0.drv-0/build/src/Mod/CAM && /gnu/store/2lxf=
ijiqqljxdxr2ppqqrn5czkh4r1rq-cmake-minimal-3.24.2/bin/cmake -E copy /tmp/gu=
ix-build-freecad-1.0.0.drv-0/source/src/Mod/CAM/Path/Op/Util.py /tmp/guix-b=
uild-freecad-1.0.0.drv-0/build/Mod/CAM/Path/Op/Util.py
/tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salomesmesh/src/SMD=
S/SMDS_UnstructuredGrid.cpp: In member function =E2=80=98void SMDS_Unstruct=
uredGrid::BuildLinks()=E2=80=99:
/tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salomesmesh/src/SMD=
S/SMDS_UnstructuredGrid.cpp:1030:25: error: no matching function for call t=
o =E2=80=98vtkCellLinks::BuildLinks(SMDS_UnstructuredGrid*)=E2=80=99
1030 | GetLinks()->BuildLinks(this);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
In file included from /tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdPar=
ty/salomesmesh/inc/SMDS_UnstructuredGrid.hxx:30,
from /tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdPar=
ty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp:20:
/gnu/store/gr8mwbl3zlx9hc4x9k5s9sgcy2kp4sr9-vtk-9.4.1/include/vtk-9.4/vtkCe=
llLinks.h:64:8: note: candidate: =E2=80=98virtual void vtkCellLinks::BuildL=
inks()=E2=80=99
64 | void BuildLinks() override;
| ^~~~~~~~~~
/gnu/store/gr8mwbl3zlx9hc4x9k5s9sgcy2kp4sr9-vtk-9.4.1/include/vtk-9.4/vtkCe=
llLinks.h:64:8: note: candidate expects 0 arguments, 1 provided
--8<---------------cut here---------------end--------------->8---
Could you take a look? (Perhaps the solution will be to retain the
previous version of VTK for use in packages like this one.)
More generally, could you test with:
guix build -P1 vtk@HIDDEN -P1 vtk@7
?
Dependent packages like =E2=80=98python-fenics-fiat=E2=80=99 are already br=
oken, so it=E2=80=99s
=E2=80=9Cokay=E2=80=9D to keep them broken.
Thanks,
Ludo=E2=80=99.
X-Loop: help-debbugs@HIDDEN
Subject: [bug#76269] [PATCH 1/2] gnu: vtk: Update to 9.4.1
References: <e34dff8f8d9c329b0d79cbb6290962579dedb073.1739457494.git.lars.bilke@HIDDEN>
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* gnu/packages/image-processing.scm (vtk): Update to 9.4.1.
Change-Id: Ife39df610c4487683a5c8d72b60eb750530c1358
---
gnu/packages/image-processing.scm | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index 405f90ca9a..a456d94863 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -323,7 +323,7 @@ (define-public opencolorio
(define-public vtk
(package
(name "vtk")
- (version "9.3.0")
+ (version "9.4.1")
(source (origin
(method url-fetch)
(uri (string-append "https://vtk.org/files/release/"
@@ -331,7 +331,7 @@ (define-public vtk
"/VTK-" version ".tar.gz"))
(sha256
(base32
- "1s8vd34nhrgnw1bf9zhfn062d53fwq3csjfwvm7lxcr5a8lvkizx"))
+ "0aa5pkw2xxzksl48ldbj3cq6r4y4mxvcpl66f64gkah2s34b0ly2"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -341,7 +341,7 @@ (define-public vtk
(string-append "ThirdParty/" dir "/vtk" dir)))
;; pugixml depended upon unconditionally
'("doubleconversion" "eigen" "expat" "freetype" "gl2ps"
- "glew" "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
+ "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
"libxml2" "lz4" "netcdf" "ogg" "png" "sqlite" "theora"
"tiff" "zlib"))
(substitute* "IO/ExportPDF/vtkPDFContextDevice2D.cxx"
@@ -360,7 +360,6 @@ (define-public vtk
"-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
- "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
@@ -380,7 +379,7 @@ (define-public vtk
"-DVTK_WRAP_PYTHON=ON"
"-DVTK_PYTHON_VERSION:STRING=3"
- "-DVTK_SMP_ENABLE_OPENNMP=ON"
+ "-DVTK_SMP_ENABLE_OPENMP=ON"
"-DVTK_SMP_ENABLE_TBB=ON"
"-DVTK_USE_MPI=ON"
#$@(if (target-riscv64?)
base-commit: c4fcf8fb627c9ea54a4a639a81766e5df3973fdc
--
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* gnu/packages/engineering.scm (freecad): Add vtk 9.4.1 patch.
* gnu/local.mk: Add freecad vtk 9.4.1 patch to list.
Change-Id: I9220aec757c2331a2dfa3eee9d0b84f774785de3
---
gnu/local.mk | 1 +
gnu/packages/engineering.scm | 1 +
gnu/packages/patches/freecad-vtk941.patch | 71 +++++++++++++++++++++++
3 files changed, 73 insertions(+)
create mode 100644 gnu/packages/patches/freecad-vtk941.patch
diff --git a/gnu/local.mk b/gnu/local.mk
index 45a9cb635e..35e1b5e6b6 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1317,6 +1317,7 @@ dist_patch_DATA = \
%D%/packages/patches/fpc-reproducibility.patch \
%D%/packages/patches/fpc-glibc-2.34-compat.patch \
%D%/packages/patches/fpm-newer-clamp-fix.patch \
+ %D%/packages/patches/freecad-vtk941.patch \
%D%/packages/patches/freedict-tools-fix-determinism.patch \
%D%/packages/patches/freedink-engine-fix-sdl-hints.patch \
%D%/packages/patches/freeimage-libtiff-compat.patch \
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 234f4a2b03..d4d920cd08 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -3173,6 +3173,7 @@ (define-public freecad
(file-name (git-file-name name version))
(sha256
(base32 "0wwymcfgi0cybj7m6awflk8c7n6iy97lpgpfhfncx3zwvjrxv588"))
+ (patches (search-patches "freecad-vtk941.patch")) ;; remove on 1.1 release
(modules '((guix build utils)))
(snippet
'(begin
diff --git a/gnu/packages/patches/freecad-vtk941.patch b/gnu/packages/patches/freecad-vtk941.patch
new file mode 100644
index 0000000000..e05548a599
--- /dev/null
+++ b/gnu/packages/patches/freecad-vtk941.patch
@@ -0,0 +1,71 @@
+From fafff3a08b7a6212ce3417e08b18cb2fc8e7e868 Mon Sep 17 00:00:00 2001
+From: wmayer <wmayer@HIDDEN>
+Date: Mon, 16 Dec 2024 10:56:43 +0100
+Subject: [PATCH] smesh: Fix build failure with vtk 9.4
+
+Fixes #18423
+---
+ .../src/SMDS/SMDS_UnstructuredGrid.cpp | 17 ++++++++++-------
+ 1 file changed, 10 insertions(+), 7 deletions(-)
+
+diff --git a/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp b/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp
+index e9895d615717..4e9d6dc05764 100644
+--- a/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp
++++ b/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp
+@@ -32,6 +32,7 @@
+ #include <vtkDoubleArray.h>
+ #include <vtkIdTypeArray.h>
+ #include <vtkUnsignedCharArray.h>
++#include <vtkVersionMacros.h>
+
+ #include <list>
+ #include <climits>
+@@ -249,14 +250,16 @@ void SMDS_UnstructuredGrid::compactGrid(std::vector<int>& idNodesOldToNew, int n
+ }
+ }
+
+- if (this->FaceLocations)
++ vtkIdTypeArray* thisFaceLocations = GetFaceLocations();
++ vtkIdTypeArray* thisFaces = GetFaces();
++ if (thisFaceLocations)
+ {
+ vtkIdTypeArray *newFaceLocations = vtkIdTypeArray::New();
+ newFaceLocations->Initialize();
+ newFaceLocations->Allocate(newTypes->GetSize());
+ vtkIdTypeArray *newFaces = vtkIdTypeArray::New();
+ newFaces->Initialize();
+- newFaces->Allocate(this->Faces->GetSize());
++ newFaces->Allocate(thisFaces->GetSize());
+ for (int i = 0; i < oldCellSize; i++)
+ {
+ if (this->Types->GetValue(i) == VTK_EMPTY_CELL)
+@@ -265,16 +268,16 @@ void SMDS_UnstructuredGrid::compactGrid(std::vector<int>& idNodesOldToNew, int n
+ if (newTypes->GetValue(newCellId) == VTK_POLYHEDRON)
+ {
+ newFaceLocations->InsertNextValue(newFaces->GetMaxId()+1);
+- int oldFaceLoc = this->FaceLocations->GetValue(i);
+- int nCellFaces = this->Faces->GetValue(oldFaceLoc++);
++ int oldFaceLoc = thisFaceLocations->GetValue(i);
++ int nCellFaces = thisFaces->GetValue(oldFaceLoc++);
+ newFaces->InsertNextValue(nCellFaces);
+ for (int n=0; n<nCellFaces; n++)
+ {
+- int nptsInFace = this->Faces->GetValue(oldFaceLoc++);
++ int nptsInFace = thisFaces->GetValue(oldFaceLoc++);
+ newFaces->InsertNextValue(nptsInFace);
+ for (int k=0; k<nptsInFace; k++)
+ {
+- int oldpt = this->Faces->GetValue(oldFaceLoc++);
++ int oldpt = thisFaces->GetValue(oldFaceLoc++);
+ newFaces->InsertNextValue(idNodesOldToNew[oldpt]);
+ }
+ }
+@@ -292,7 +295,7 @@ void SMDS_UnstructuredGrid::compactGrid(std::vector<int>& idNodesOldToNew, int n
+ }
+ else
+ {
+- this->SetCells(newTypes, newLocations, newConnectivity, FaceLocations, Faces);
++ this->SetCells(newTypes, newLocations, newConnectivity, thisFaceLocations, thisFaces);
+ }
+
+ newPoints->Delete();
\ No newline at end of file
--
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Dear Ludovic,
thanks for your comments. I have uploaded a patch for freecad, this one:
https://github.com/FreeCAD/FreeCAD/commit/fafff3a08b7a6212ce3417e08b18cb2=
fc8e7e868
I hope this is fine.
Sincerely,
Lars
On 18 Feb 2025, at 18:19, Ludovic Court=C3=A8s wrote:
> Hi Lars,
>
> Lars Bilke <lars.bilke@HIDDEN> skribis:
>
>> * gnu/packages/image-processing.scm (vtk): Update to 9.4.1.
>>
>> Change-Id: Ife39df610c4487683a5c8d72b60eb750530c1358
>
> Apparently this breaks at least freecad:
>
> --8<---------------cut here---------------start------------->8---
> cd /tmp/guix-build-freecad-1.0.0.drv-0/build/src/Mod/CAM && =
> /gnu/store/2lxfijiqqljxdxr2ppqqrn5czkh4r1rq-cmake-minimal-3.24.2/bin/cm=
ake =
> -E copy =
> /tmp/guix-build-freecad-1.0.0.drv-0/source/src/Mod/CAM/Path/Op/Util.py =
> /tmp/guix-build-freecad-1.0.0.drv-0/build/Mod/CAM/Path/Op/Util.py
> /tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salomesmesh/src=
/SMDS/SMDS_UnstructuredGrid.cpp: =
> In member function =E2=80=98void SMDS_UnstructuredGrid::BuildLinks()=E2=
=80=99:
> /tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salomesmesh/src=
/SMDS/SMDS_UnstructuredGrid.cpp:1030:25: =
> error: no matching function for call to =
> =E2=80=98vtkCellLinks::BuildLinks(SMDS_UnstructuredGrid*)=E2=80=99
> 1030 | GetLinks()->BuildLinks(this);
> | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
> In file included from =
> /tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salomesmesh/inc=
/SMDS_UnstructuredGrid.hxx:30,
> from =
> /tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salomesmesh/src=
/SMDS/SMDS_UnstructuredGrid.cpp:20:
> /gnu/store/gr8mwbl3zlx9hc4x9k5s9sgcy2kp4sr9-vtk-9.4.1/include/vtk-9.4/v=
tkCellLinks.h:64:8: =
> note: candidate: =E2=80=98virtual void vtkCellLinks::BuildLinks()=E2=80=
=99
> 64 | void BuildLinks() override;
> | ^~~~~~~~~~
> /gnu/store/gr8mwbl3zlx9hc4x9k5s9sgcy2kp4sr9-vtk-9.4.1/include/vtk-9.4/v=
tkCellLinks.h:64:8: =
> note: candidate expects 0 arguments, 1 provided
> --8<---------------cut here---------------end--------------->8---
>
> Could you take a look? (Perhaps the solution will be to retain the
> previous version of VTK for use in packages like this one.)
>
> More generally, could you test with:
>
> guix build -P1 vtk@HIDDEN -P1 vtk@7
>
> ?
>
> Dependent packages like =E2=80=98python-fenics-fiat=E2=80=99 are alread=
y broken, =
> so it=E2=80=99s
> =E2=80=9Cokay=E2=80=9D to keep them broken.
>
> Thanks,
> Ludo=E2=80=99.=
--Boundary_(ID_7yX2fbrQn3yKo3yaU0/WoQ)
Content-type: text/html; charset=UTF-8
Content-transfer-encoding: QUOTED-PRINTABLE
<!DOCTYPE html>
<html>
<head>
<meta http-equiv=3D"Content-Type" content=3D"text/xhtml; charset=3Dut=
f-8">
</head>
<body><div style=3D"font-family: sans-serif;"><div class=3D"markdown"=
style=3D"white-space: normal;">
<p dir=3D"auto">Dear Ludovic,</p>
<p dir=3D"auto">thanks for your comments. I have uploaded a patch for=
freecad, this one:</p>
<p dir=3D"auto"><a href=3D"https://github.com/FreeCAD/FreeCAD/commit/=
fafff3a08b7a6212ce3417e08b18cb2fc8e7e868" style=3D"color: #3983C4;">h=
ttps://github.com/FreeCAD/FreeCAD/commit/fafff3a08b7a6212ce3417e08b18=
cb2fc8e7e868</a></p>
<p dir=3D"auto">I hope this is fine.</p>
<p dir=3D"auto">Sincerely,<br>
Lars</p>
<p dir=3D"auto">On 18 Feb 2025, at 18:19, Ludovic Court=C3=A8s wrote:=
</p>
<blockquote style=3D"margin: 0 0 5px; padding-left: 5px; border-left:=
2px solid #777777; color: #777777;">
<p dir=3D"auto">Hi Lars,</p>
<p dir=3D"auto">Lars Bilke <a href=3D"mailto:lars.bilke@HIDDEN" style=
=3D"color: #777777;">lars.bilke@HIDDEN</a> skribis:</p>
<blockquote style=3D"margin: 0 0 5px; padding-left: 5px; border-left:=
2px solid #777777; border-left-color: #999999; color: #999999;">
<ul>
<li>gnu/packages/image-processing.scm (vtk): Update to 9.4.1.</li>
</ul>
<p dir=3D"auto">Change-Id: Ife39df610c4487683a5c8d72b60eb750530c1358<=
/p>
</blockquote>
<p dir=3D"auto">Apparently this breaks at least freecad:</p>
<p dir=3D"auto">--8<---------------cut here---------------start---=
---------->8---<br>
cd /tmp/guix-build-freecad-1.0.0.drv-0/build/src/Mod/CAM && /=
gnu/store/2lxfijiqqljxdxr2ppqqrn5czkh4r1rq-cmake-minimal-3.24.2/bin/c=
make -E copy /tmp/guix-build-freecad-1.0.0.drv-0/source/src/Mod/CAM/P=
ath/Op/Util.py /tmp/guix-build-freecad-1.0.0.drv-0/build/Mod/CAM/Path=
/Op/Util.py<br>
/tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salomesmesh/s=
rc/SMDS/SMDS_UnstructuredGrid.cpp: In member function =E2=80=98void S=
MDS_UnstructuredGrid::BuildLinks()=E2=80=99:<br>
/tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salomesmesh/s=
rc/SMDS/SMDS_UnstructuredGrid.cpp:1030:25: error: no matching functio=
n for call to =E2=80=98vtkCellLinks::BuildLinks(SMDS_UnstructuredGrid=
*)=E2=80=99<br>
1030 | GetLinks()->BuildLinks(this);<br>
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~<br>
In file included from /tmp/guix-build-freecad-1.0.0.drv-0/source/src/=
3rdParty/salomesmesh/inc/SMDS_UnstructuredGrid.hxx:30,<br>
=66rom /tmp/guix-build-freecad-1.0.0.drv-0/source/src/3rdParty/salome=
smesh/src/SMDS/SMDS_UnstructuredGrid.cpp:20:<br>
/gnu/store/gr8mwbl3zlx9hc4x9k5s9sgcy2kp4sr9-vtk-9.4.1/include/vtk-9.4=
/vtkCellLinks.h:64:8: note: candidate: =E2=80=98virtual void vtkCellL=
inks::BuildLinks()=E2=80=99<br>
64 | void BuildLinks() override;<br>
| ^~~~~~~~~~<br>
/gnu/store/gr8mwbl3zlx9hc4x9k5s9sgcy2kp4sr9-vtk-9.4.1/include/vtk-9.4=
/vtkCellLinks.h:64:8: note: candidate expects 0 arguments, 1 provid=
ed<br>
--8<---------------cut here---------------end--------------->8-=
--</p>
<p dir=3D"auto">Could you take a look? (Perhaps the solution will be=
to retain the<br>
previous version of VTK for use in packages like this one.)</p>
<p dir=3D"auto">More generally, could you test with:</p>
<p dir=3D"auto">guix build -P1 vtk@HIDDEN -P1 vtk@7</p>
<p dir=3D"auto">?</p>
<p dir=3D"auto">Dependent packages like =E2=80=98python-fenics-fiat=
=E2=80=99 are already broken, so it=E2=80=99s<br>
=E2=80=9Cokay=E2=80=9D to keep them broken.</p>
<p dir=3D"auto">Thanks,<br>
Ludo=E2=80=99.</p>
</blockquote>
</div>
</div>
</body>
</html>
--Boundary_(ID_7yX2fbrQn3yKo3yaU0/WoQ)--
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Subject: [bug#76269] [PATCH 2/2] gnu: freecad: Add vtk 9.4.1 patch.
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Hi Lars,
Lars Bilke <lars.bilke@HIDDEN> writes:
> * gnu/packages/engineering.scm (freecad): Add vtk 9.4.1 patch.
> * gnu/local.mk: Add freecad vtk 9.4.1 patch to list.
>
> Change-Id: I9220aec757c2331a2dfa3eee9d0b84f774785de3
> ---
> gnu/local.mk | 1 +
> gnu/packages/engineering.scm | 1 +
> gnu/packages/patches/freecad-vtk941.patch | 71 +++++++++++++++++++++++
> 3 files changed, 73 insertions(+)
> create mode 100644 gnu/packages/patches/freecad-vtk941.patch
>
> diff --git a/gnu/local.mk b/gnu/local.mk
> index 45a9cb635e..35e1b5e6b6 100644
> --- a/gnu/local.mk
> +++ b/gnu/local.mk
> @@ -1317,6 +1317,7 @@ dist_patch_DATA = \
> %D%/packages/patches/fpc-reproducibility.patch \
> %D%/packages/patches/fpc-glibc-2.34-compat.patch \
> %D%/packages/patches/fpm-newer-clamp-fix.patch \
> + %D%/packages/patches/freecad-vtk941.patch \
> %D%/packages/patches/freedict-tools-fix-determinism.patch \
> %D%/packages/patches/freedink-engine-fix-sdl-hints.patch \
> %D%/packages/patches/freeimage-libtiff-compat.patch \
> diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
> index 234f4a2b03..d4d920cd08 100644
> --- a/gnu/packages/engineering.scm
> +++ b/gnu/packages/engineering.scm
> @@ -3173,6 +3173,7 @@ (define-public freecad
> (file-name (git-file-name name version))
> (sha256
> (base32 "0wwymcfgi0cybj7m6awflk8c7n6iy97lpgpfhfncx3zwvjrxv588"))
> + (patches (search-patches "freecad-vtk941.patch")) ;; remove on 1.1 release
Thanks for the patch. Is there a reason we cannot update our freecade
to 1.1 yet? Perhaps it is not released?
Otherwise, LGTM.
Reviewed-by: Maxim Cournoyer <maxim.cournoyer@HIDDEN>
--
Thanks,
Maxim
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Subject: [bug#76269] [PATCH 2/2] gnu: freecad: Add vtk 9.4.1 patch.
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Dear Maxim,
thanks for your review.
FreeCAD 1.1 is not released yet.
Sincerely,
Lars
On 27 Feb 2025, at 15:27, Maxim Cournoyer wrote:
>
> Thanks for the patch. Is there a reason we cannot update our freecade
> to 1.1 yet? Perhaps it is not released?
>
> Otherwise, LGTM.
>
> Reviewed-by: Maxim Cournoyer <maxim.cournoyer@HIDDEN>
>
> --
> Thanks,
> Maxim
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Subject: [bug#76269] [PATCH 1/3] gnu: vtk: Update to 9.4.1
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* gnu/packages/image-processing.scm (vtk): Update to 9.4.1.
Change-Id: Ife39df610c4487683a5c8d72b60eb750530c1358
---
gnu/packages/image-processing.scm | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index 405f90ca9a..a456d94863 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -323,7 +323,7 @@ (define-public opencolorio
(define-public vtk
(package
(name "vtk")
- (version "9.3.0")
+ (version "9.4.1")
(source (origin
(method url-fetch)
(uri (string-append "https://vtk.org/files/release/"
@@ -331,7 +331,7 @@ (define-public vtk
"/VTK-" version ".tar.gz"))
(sha256
(base32
- "1s8vd34nhrgnw1bf9zhfn062d53fwq3csjfwvm7lxcr5a8lvkizx"))
+ "0aa5pkw2xxzksl48ldbj3cq6r4y4mxvcpl66f64gkah2s34b0ly2"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -341,7 +341,7 @@ (define-public vtk
(string-append "ThirdParty/" dir "/vtk" dir)))
;; pugixml depended upon unconditionally
'("doubleconversion" "eigen" "expat" "freetype" "gl2ps"
- "glew" "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
+ "hdf5" "jpeg" "jsoncpp" "libharu" "libproj"
"libxml2" "lz4" "netcdf" "ogg" "png" "sqlite" "theora"
"tiff" "zlib"))
(substitute* "IO/ExportPDF/vtkPDFContextDevice2D.cxx"
@@ -360,7 +360,6 @@ (define-public vtk
"-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
- "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
"-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
@@ -380,7 +379,7 @@ (define-public vtk
"-DVTK_WRAP_PYTHON=ON"
"-DVTK_PYTHON_VERSION:STRING=3"
- "-DVTK_SMP_ENABLE_OPENNMP=ON"
+ "-DVTK_SMP_ENABLE_OPENMP=ON"
"-DVTK_SMP_ENABLE_TBB=ON"
"-DVTK_USE_MPI=ON"
#$@(if (target-riscv64?)
base-commit: c4fcf8fb627c9ea54a4a639a81766e5df3973fdc
--
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* gnu/packages/engineering.scm (freecad): Add vtk 9.4.1 patch.
* gnu/local.mk: Add freecad vtk 9.4.1 patch to list.
Change-Id: I9220aec757c2331a2dfa3eee9d0b84f774785de3
---
gnu/local.mk | 1 +
gnu/packages/engineering.scm | 1 +
gnu/packages/patches/freecad-vtk941.patch | 71 +++++++++++++++++++++++
3 files changed, 73 insertions(+)
create mode 100644 gnu/packages/patches/freecad-vtk941.patch
diff --git a/gnu/local.mk b/gnu/local.mk
index 45a9cb635e..35e1b5e6b6 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1317,6 +1317,7 @@ dist_patch_DATA = \
%D%/packages/patches/fpc-reproducibility.patch \
%D%/packages/patches/fpc-glibc-2.34-compat.patch \
%D%/packages/patches/fpm-newer-clamp-fix.patch \
+ %D%/packages/patches/freecad-vtk941.patch \
%D%/packages/patches/freedict-tools-fix-determinism.patch \
%D%/packages/patches/freedink-engine-fix-sdl-hints.patch \
%D%/packages/patches/freeimage-libtiff-compat.patch \
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 234f4a2b03..d4d920cd08 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -3173,6 +3173,7 @@ (define-public freecad
(file-name (git-file-name name version))
(sha256
(base32 "0wwymcfgi0cybj7m6awflk8c7n6iy97lpgpfhfncx3zwvjrxv588"))
+ (patches (search-patches "freecad-vtk941.patch")) ;; remove on 1.1 release
(modules '((guix build utils)))
(snippet
'(begin
diff --git a/gnu/packages/patches/freecad-vtk941.patch b/gnu/packages/patches/freecad-vtk941.patch
new file mode 100644
index 0000000000..e05548a599
--- /dev/null
+++ b/gnu/packages/patches/freecad-vtk941.patch
@@ -0,0 +1,71 @@
+From fafff3a08b7a6212ce3417e08b18cb2fc8e7e868 Mon Sep 17 00:00:00 2001
+From: wmayer <wmayer@HIDDEN>
+Date: Mon, 16 Dec 2024 10:56:43 +0100
+Subject: [PATCH] smesh: Fix build failure with vtk 9.4
+
+Fixes #18423
+---
+ .../src/SMDS/SMDS_UnstructuredGrid.cpp | 17 ++++++++++-------
+ 1 file changed, 10 insertions(+), 7 deletions(-)
+
+diff --git a/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp b/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp
+index e9895d615717..4e9d6dc05764 100644
+--- a/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp
++++ b/src/3rdParty/salomesmesh/src/SMDS/SMDS_UnstructuredGrid.cpp
+@@ -32,6 +32,7 @@
+ #include <vtkDoubleArray.h>
+ #include <vtkIdTypeArray.h>
+ #include <vtkUnsignedCharArray.h>
++#include <vtkVersionMacros.h>
+
+ #include <list>
+ #include <climits>
+@@ -249,14 +250,16 @@ void SMDS_UnstructuredGrid::compactGrid(std::vector<int>& idNodesOldToNew, int n
+ }
+ }
+
+- if (this->FaceLocations)
++ vtkIdTypeArray* thisFaceLocations = GetFaceLocations();
++ vtkIdTypeArray* thisFaces = GetFaces();
++ if (thisFaceLocations)
+ {
+ vtkIdTypeArray *newFaceLocations = vtkIdTypeArray::New();
+ newFaceLocations->Initialize();
+ newFaceLocations->Allocate(newTypes->GetSize());
+ vtkIdTypeArray *newFaces = vtkIdTypeArray::New();
+ newFaces->Initialize();
+- newFaces->Allocate(this->Faces->GetSize());
++ newFaces->Allocate(thisFaces->GetSize());
+ for (int i = 0; i < oldCellSize; i++)
+ {
+ if (this->Types->GetValue(i) == VTK_EMPTY_CELL)
+@@ -265,16 +268,16 @@ void SMDS_UnstructuredGrid::compactGrid(std::vector<int>& idNodesOldToNew, int n
+ if (newTypes->GetValue(newCellId) == VTK_POLYHEDRON)
+ {
+ newFaceLocations->InsertNextValue(newFaces->GetMaxId()+1);
+- int oldFaceLoc = this->FaceLocations->GetValue(i);
+- int nCellFaces = this->Faces->GetValue(oldFaceLoc++);
++ int oldFaceLoc = thisFaceLocations->GetValue(i);
++ int nCellFaces = thisFaces->GetValue(oldFaceLoc++);
+ newFaces->InsertNextValue(nCellFaces);
+ for (int n=0; n<nCellFaces; n++)
+ {
+- int nptsInFace = this->Faces->GetValue(oldFaceLoc++);
++ int nptsInFace = thisFaces->GetValue(oldFaceLoc++);
+ newFaces->InsertNextValue(nptsInFace);
+ for (int k=0; k<nptsInFace; k++)
+ {
+- int oldpt = this->Faces->GetValue(oldFaceLoc++);
++ int oldpt = thisFaces->GetValue(oldFaceLoc++);
+ newFaces->InsertNextValue(idNodesOldToNew[oldpt]);
+ }
+ }
+@@ -292,7 +295,7 @@ void SMDS_UnstructuredGrid::compactGrid(std::vector<int>& idNodesOldToNew, int n
+ }
+ else
+ {
+- this->SetCells(newTypes, newLocations, newConnectivity, FaceLocations, Faces);
++ this->SetCells(newTypes, newLocations, newConnectivity, thisFaceLocations, thisFaces);
+ }
+
+ newPoints->Delete();
\ No newline at end of file
--
2.46.1
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* gnu/packages/image-processing.scm (vtk): Add jsoncpp to
propagated-inputs. This fixes the OpenCV configuration step.
Change-Id: I863079394a4345cc5f0a8e67fe19831070f16d09
---
gnu/packages/image-processing.scm | 1 +
1 file changed, 1 insertion(+)
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index a456d94863..fed26291e5 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -440,6 +440,7 @@ (define-public vtk
;; 'find_package(THEORA)', which in turns looks for libogg. Likewise for
;; TBB.
(list libogg
+ jsoncpp ; fixes OpenCVs configure not finding JsonCpp::JsonCpp target
tbb))
(home-page "https://vtk.org/")
(synopsis "Libraries for 3D computer graphics")
--
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--=-=-=
Content-Type: text/plain
With your patch, I manage to build and run vtk and freecad.
A couple of comments:
- better send patches as [PATCH v2 1/3], etc. (hard to follow otherwise)
- use guix style/lint to check the patches before sending
There are lots of dependent packages still to build, see
https://qa.guix.gnu.org/issue/76269
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From: Maxim Cournoyer <maxim.cournoyer@HIDDEN>
In-Reply-To: <871pvjtkuc.fsf@HIDDEN> (Cayetano Santos's message of
"Thu, 27 Feb 2025 17:26:35 +0100")
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<871pvjtkuc.fsf@HIDDEN>
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Hi,
Cayetano Santos <csantosb@HIDDEN> writes:
> With your patch, I manage to build and run vtk and freecad.
>
> A couple of comments:
>
> - better send patches as [PATCH v2 1/3], etc. (hard to follow otherwise)
> - use guix style/lint to check the patches before sending
>
> There are lots of dependent packages still to build, see
>
> https://qa.guix.gnu.org/issue/76269
Good call, let's give this some extra time.
--
Thanks,
Maxim
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--=-=-=
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>ven. 28 f=C3=A9vr. 2025 at 11:15, Maxim Cournoyer <maxim.cournoyer@HIDDEN=
om> wrote:
>> There are lots of dependent packages still to build, see
>>
>> https://qa.guix.gnu.org/issue/76269
>
> Good call, let's give this some extra time.
One of the tests of OpenCV fails now with the latest patch set:
https://data.qa.guix.gnu.org/gnu/store/kbmx3vlin6h8jclqchmv7y5px4ysz818=
-opencv-4.11.0.drv
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From: Maxim Cournoyer <maxim.cournoyer@HIDDEN>
In-Reply-To: <87bjumh4tg.fsf@HIDDEN> (Cayetano Santos's message of
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References: <e34dff8f8d9c329b0d79cbb6290962579dedb073.1739457494.git.lars.bilke@HIDDEN>
<871pvjtkuc.fsf@HIDDEN> <87a5a6izla.fsf@HIDDEN>
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Hi Lars,
Cayetano Santos <csantosb@HIDDEN> writes:
>>ven. 28 f=C3=A9vr. 2025 at 11:15, Maxim Cournoyer <maxim.cournoyer@gmail.=
com> wrote:
>
>>> There are lots of dependent packages still to build, see
>>>
>>> https://qa.guix.gnu.org/issue/76269
>>
>> Good call, let's give this some extra time.
>
> One of the tests of OpenCV fails now with the latest patch set:
>
> https://data.qa.guix.gnu.org/gnu/store/kbmx3vlin6h8jclqchmv7y5px4ysz8=
18-opencv-4.11.0.drv
Could you please take a look?
The error is a segfault in the opencv_test_viz test:
--8<---------------cut here---------------start------------->8---
12/45 Test #12: opencv_test_viz ...................***Exception: SegFault =
0.06 sec
--8<---------------cut here---------------end--------------->8---
See: https://bordeaux.guix.gnu.org/build/d9a59eed-08db-4916-b740-922b92120b=
02/log
--=20
Thanks,
Maxim
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