Nicolas Graves <ngraves@HIDDEN>
to control <at> debbugs.gnu.org.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 06/15] gnu: python-peachpy: Update to 0.2.0-3.349e8f8.
Date: Tue, 25 Feb 2025 01:15:22 +0100
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* gnu/packages/python-xyz.scm (python-peachpy): Update to
0.2.0-3.349e8f8.
[build-system]: Switch to pyproject-build-system.
[arguments]: Remove {phases}. Add {test-target} to ignore a failing
test.
[native-inputs]: Remove python-nose, python-rednose. Add
python-pytest, python-wheel.
---
gnu/packages/python-xyz.scm | 18 ++++++++----------
1 file changed, 8 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f57a7c6bd6..271e52df34 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -36569,9 +36569,9 @@ (define-public python-angr
(define-public python-peachpy
;; There is no tag in this repo.
- (let ((commit "913d74c35a6b1d330e90bfc055208ce5b06b35a0")
+ (let ((commit "349e8f836142b2ed0efeb6bb99b1b715d87202e9")
(version "0.2.0") ;from 'peachpy/__init__.py'
- (revision "2"))
+ (revision "3"))
(package
(name "python-peachpy")
(version (git-version version revision commit))
@@ -36582,17 +36582,15 @@ (define-public python-peachpy
(file-name (git-file-name name version))
(sha256
(base32
- "1wnqxspxsacw4556q0b9fbw11nhrkgn6gs8g43jdnpa35f3z9kb6"))
+ "16pnkghmqjc7pbws0yhyrwlz43d5pffb5c6v2bb4jk0j537gwzbi"))
(patches (search-patches "python-peachpy-determinism.patch"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- '(#:phases (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "nosetests")))))))
+ ;; The issue is known and the test will probably never be fixed.
+ ;; https://github.com/Maratyszcza/PeachPy/issues/131
+ (list #:test-flags ''("--ignore=tests/arm/test_arm.py")))
(native-inputs
- (list python-nose python-rednose python-setuptools))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-six python-opcodes))
(synopsis "Efficient assembly code generation in Python")
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 07/15] gnu: sdkmanager: Update python-urllib3.
Date: Tue, 25 Feb 2025 08:05:54 +0100
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* gnu/packages/android.scm (sdkmanager)[inputs]: Switch to
python-urllib3-next.
---
gnu/packages/android.scm | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm
index cb699b06dc..bafca18abe 100644
--- a/gnu/packages/android.scm
+++ b/gnu/packages/android.scm
@@ -738,7 +738,10 @@ (define-public sdkmanager
(base32
"11as7n2mj3nbqsqb3ivyv9985n73i022s748qvjg36cs8ig50afx"))))
(build-system pyproject-build-system)
- (inputs (list python-requests python-argcomplete python-urllib3 gnupg))
+ (inputs (list python-requests
+ python-argcomplete
+ python-urllib3-next
+ gnupg))
(native-inputs (list python-setuptools python-wheel))
(arguments
(list #:phases #~(modify-phases %standard-phases
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 05/15] gnu: python-pykdtree: Update to 1.3.9.
Date: Tue, 25 Feb 2025 00:20:32 +0100
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* gnu/packages/python-xyz.scm (python-pykdtree): Update to 1.3.9.
[native-inputs]: Remove python-nose. Add python-cython, python-pytest,
python-setuptools, python-wheel.
---
gnu/packages/python-xyz.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a5eefb8be2..f57a7c6bd6 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -10783,16 +10783,16 @@ (define-public python-perfplot
(define-public python-pykdtree
(package
(name "python-pykdtree")
- (version "1.3.4")
+ (version "1.3.9")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pykdtree" version))
(sha256
- (base32 "0p8n2ljdacfixkiw092974dmhy4s1c0h032ii1z9kwi9h5h5rgmy"))))
+ (base32 "0q4zrqdn8ad6f710yggkhvx4avf2h1hsbg9qa7ghly54v4vhpgd7"))))
(build-system python-build-system)
(native-inputs
- (list python-nose))
+ (list python-cython python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-numpy))
(home-page "https://github.com/storpipfugl/pykdtree")
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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Subject: [PATCH 15/15] gnu: python-anndata: Ignore failing test.
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Content preview: * gnu/packages/python-xyz.scm
(python-anndata)[arguments]{test-flags}:
Ignore test_read_write_X test. --- gnu/packages/python-xyz.scm | 8 ++++++--
1 file changed, 6 insertions(+),
2 deletions(-) diff --git a/gnu/packages/python-xyz.scm
b/gnu/packages/python-xyz.scm index 28e0545f26..2063dceeea 100644 ---
a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm @@ -30064,8 +30064,12 @@ [...]
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pts rule name description
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* gnu/packages/python-xyz.scm (python-anndata)[arguments]{test-flags}:
Ignore test_read_write_X test.
---
gnu/packages/python-xyz.scm | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 28e0545f26..2063dceeea 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -30064,8 +30064,12 @@ (define-public python-anndata
(arguments
(list
#:test-flags
- ;; This one test seemingly freezes
- '(list "-k" "not test_read_lazy_h5_cluster")
+ #~(list "-k" #$(string-append
+ ;; This one test seemingly freezes
+ "not test_read_lazy_h5_cluster"
+ ;; Fails with a numpy deprecation warning
+ ;; but not an actual failure
+ " and not test_read_write_X"))
#:phases
#~(modify-phases %standard-phases
;; Doctests require scanpy from (gnu packages bioinformatics)
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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Subject: [PATCH 14/15] gnu: python-ipympl: Update to 0.9.2.
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Content preview: * gnu/packages/jupyter.scm (python-ipympl): Update to 0.9.2.
[native-inputs]: Add python-hatchling. --- gnu/packages/jupyter.scm | 6 +++---
1 file changed, 3 insertions(+),
3 deletions(-) diff --git a/gnu/packages/jupyter.scm
b/gnu/packages/jupyter.scm index d5c298056c..6c2f549583 100644 ---
a/gnu/packages/jupyter.scm
+++ b/gnu/packages/jupyter.scm @@ -1055,13 +1055,13 @@ (define-publi [...]
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* gnu/packages/jupyter.scm (python-ipympl): Update to 0.9.2.
[native-inputs]: Add python-hatchling.
---
gnu/packages/jupyter.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm
index d5c298056c..6c2f549583 100644
--- a/gnu/packages/jupyter.scm
+++ b/gnu/packages/jupyter.scm
@@ -1055,13 +1055,13 @@ (define-public python-sparqlkernel
(define-public python-ipympl
(package
(name "python-ipympl")
- (version "0.9.1")
+ (version "0.9.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ipympl" version))
(sha256
- (base32 "11rppjdqzgs4pfiq8gww5xkpbk21fp86vvv839v56b9rqq06j2b4"))))
+ (base32 "12qgiy08klqb5gipm23yzh09p5g2k8ihcq2bprprdya84acw2rf8"))))
(build-system python-build-system)
(propagated-inputs
(list python-ipython
@@ -1072,7 +1072,7 @@ (define-public python-ipympl
python-pillow
python-traitlets))
(native-inputs
- (list python-jupyter-packaging))
+ (list python-hatchling python-jupyter-packaging))
(home-page "https://matplotlib.org/ipympl/")
(synopsis "Matplotlib Jupyter Extension")
(description "Leveraging the Jupyter interactive widgets framework, ipympl
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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Subject: [PATCH 13/15] gnu: Remove python-dictpath.
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Content preview: * gnu/packages/python-xyz.scm (python-dictpath): Remove
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* gnu/packages/python-xyz.scm (python-dictpath): Remove variable.
* gnu/packages/python-web.scm (python-openapi-core)[propagated-inputs]:
Remove unecessary python-dictpath.
---
gnu/packages/python-web.scm | 1 -
gnu/packages/python-xyz.scm | 19 -------------------
2 files changed, 20 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 9db9f46638..e6918a530e 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -3160,7 +3160,6 @@ (define-public python-openapi-core
(propagated-inputs
(list python-attrs
python-aiohttp
- python-dictpath
python-isodate
python-jsonschema
python-lazy-object-proxy
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0aa5b23278..28e0545f26 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -33748,25 +33748,6 @@ (define-public python-dictdiffer
dictionaries.")
(license license:expat)))
-(define-public python-dictpath
- (package
- (name "python-dictpath")
- (version "0.1.3")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "dictpath" version))
- (sha256
- (base32 "1n4hq4wbgaw59bbb16nhkgg5wk8sl4iw940vjrgx4xmifqxxw73m"))))
- (build-system python-build-system)
- (native-inputs (list python-pytest python-pytest-cov python-pytest-flake8))
- (home-page "https://github.com/p1c2u/pathable")
- (synopsis "Object-oriented path library for Python")
- (description "This object-oriented dictionary path Python library enables
-traversing resources like paths or accessing resources on demand with separate
-accessor layer.")
- (license license:asl2.0)))
-
(define-public pyzo
(package
(name "pyzo")
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 11/15] gnu: python-pyparsing: Update to 3.2.1.
Date: Tue, 25 Feb 2025 11:11:07 +0100
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* gnu/packages/python-build.scm (python-pyparsing): Update to 3.2.1.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-flit-core.
(python-pyparsing-2.4.7)[native-inputs]: Add python-setuptools,
python-wheel.
---
gnu/packages/python-build.scm | 10 ++++++----
1 file changed, 6 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 375896a76a..6bea44fee6 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -412,14 +412,14 @@ (define-public python-pep517-bootstrap
(define-public python-pyparsing
(package
(name "python-pyparsing")
- (version "3.0.6")
+ (version "3.2.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyparsing" version))
(sha256
- (base32 "109b9r802wb472hgmxclljprh5cid0w3p6mk9alba7pg2c0frgfr"))))
- (build-system python-build-system)
+ (base32 "02jz5rv3vx46xvjszda467l269jz9narlrwd0a83mpk6zma0i631"))))
+ (build-system pyproject-build-system)
(outputs '("out" "doc"))
(arguments
`(#:tests? #f ;no test target
@@ -440,6 +440,7 @@ (define-public python-pyparsing
(find-files dir ".*")))
(list "docs" "htmldoc" "examples")
(list doc html-doc examples))))))))
+ (native-inputs (list python-flit-core))
(home-page "https://github.com/pyparsing/pyparsing")
(synopsis "Python parsing class library")
(description
@@ -459,7 +460,8 @@ (define-public python-pyparsing-2.4.7
(method url-fetch)
(uri (pypi-uri "pyparsing" version))
(sha256
- (base32 "1hgc8qrbq1ymxbwfbjghv01fm3fbpjwpjwi0bcailxxzhf3yq0y2"))))))
+ (base32 "1hgc8qrbq1ymxbwfbjghv01fm3fbpjwpjwi0bcailxxzhf3yq0y2"))))
+ (native-inputs (list python-setuptools python-wheel))))
(define-public python-packaging-bootstrap
(package
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 12/15] gnu: behave: Remove python-nose native-input.
Date: Tue, 25 Feb 2025 11:14:55 +0100
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* gnu/packages/check.scm (behave)[native-inputs]: Remove python-nose.
---
gnu/packages/check.scm | 1 -
1 file changed, 1 deletion(-)
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index eb1923e8ad..98f950142d 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -3440,7 +3440,6 @@ (define-public behave
(build-system pyproject-build-system)
(native-inputs
(list python-mock
- python-nose
python-assertpy
python-pathpy
python-pyhamcrest
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 10/15] gnu: python-vcrpy: Update to 7.0.0.
Date: Tue, 25 Feb 2025 10:58:01 +0100
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* gnu/packages/python-check.scm (python-vcrpy): Update to 7.0.0.
[native-inputs]: Remove python-flask, python-ipaddress, python-mock.
Add python-aiohttp, python-boto3, python-httpx, python-pytest-aiohttp,
python-pytest-asyncio, python-requests, python-tornado,
python-werkzeug.
[propagated-inputs]: Remove python-six.
---
gnu/packages/python-check.scm | 21 +++++++++++----------
1 file changed, 11 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 34125475ad..d0319fcbc0 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -3244,13 +3244,13 @@ (define-public python-pycotap
(define-public python-vcrpy
(package
(name "python-vcrpy")
- (version "6.0.2")
+ (version "7.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "vcrpy" version))
(sha256
- (base32 "02fwmmc33qqybzbj1lvdz458g1fffm5cgnqihj4larw4268kvqc8"))))
+ (base32 "0l1sdfc51024jclqv9104nagpirxx8w0gcn5h0bdxv950jnr2qqp"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -3263,22 +3263,23 @@ (define-public python-vcrpy
"test_testcase_playback")
" and not "))))
(native-inputs
- (list nss-certs-for-test
- python-flask
+ (list python-aiohttp
+ python-boto3
python-httplib2
- python-ipaddress
- python-mock
+ python-httpx
python-pytest
python-pytest-cov
+ python-pytest-aiohttp
+ python-pytest-asyncio
python-pytest-httpbin
+ python-requests
python-setuptools
+ python-tornado
python-urllib3
+ python-werkzeug
python-wheel))
(propagated-inputs
- (list python-pyyaml
- python-six
- python-wrapt
- python-yarl))
+ (list python-pyyaml python-wrapt python-yarl))
(home-page "https://github.com/kevin1024/vcrpy")
(synopsis "Automatically mock your HTTP interactions")
(description
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 09/15] gnu: Remove python-rednose.
Date: Tue, 25 Feb 2025 08:13:28 +0100
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This package is broken with the latest python version, and is easy to
remove.
* gnu/packages/check.scm (python-rednose): Delete variable.
* gnu/packages/python-xyz.scm (python-sure) and
* gnu/packages/web.scm (python-httpretty):
[arguments]: Add 'remove-rednose-dependency in {phases}.
[native-inputs]: Remove python-rednose.
---
gnu/packages/check.scm | 31 -------------------------------
gnu/packages/python-xyz.scm | 12 +++++++++++-
gnu/packages/web.scm | 7 ++++++-
3 files changed, 17 insertions(+), 33 deletions(-)
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 5e3ad744cc..eb1923e8ad 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -3496,37 +3496,6 @@ (define-public python-behave-web-api
JSON APIs with Behave.")
(license license:expat)))
-(define-public python-rednose
- (package
- (name "python-rednose")
- (version "1.2.3")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "rednose" version))
- (sha256
- (base32
- "11x5nx5b4wdq04s7vj1gcdl07jvvkfb37p0r5lg773gr5rr8mj6h"))))
- (build-system python-build-system)
- (arguments
- `(#:phases (modify-phases %standard-phases
- (add-after 'unpack 'patch-setup.py
- (lambda _
- ;; Six is only required for tests and later versions
- ;; work fine.
- (substitute* "setup.py"
- (("six==1.10.0") "six"))
- #t)))))
- (propagated-inputs
- (list python-colorama python-termstyle))
- (native-inputs
- (list python-six python-nose))
- (home-page "https://github.com/JBKahn/rednose")
- (synopsis "Colored output for Python nosetests")
- (description "This package provides colored output for the
-@command{nosetests} command of the Python Nose unit test framework.")
- (license license:bsd-3)))
-
(define-public python-nose-exclude
(package
(name "python-nose-exclude")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 271e52df34..0aa5b23278 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -26659,10 +26659,20 @@ (define-public python-sure
(base32
"1jmrskj399idw1czx6dvy2zfaijnwi02b55vx979ixp7q2mnzz68"))))
(build-system python-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'unpack 'remove-rednose-dependency
+ (lambda _
+ (substitute* "setup.py"
+ (("'rednose'") ""))
+ (substitute* '("requirements.txt" "setup.cfg")
+ (("rednose.*") "")))))))
(propagated-inputs
(list python-mock python-six))
(native-inputs
- (list python-nose python-rednose))
+ (list python-nose))
(home-page "https://github.com/gabrielfalcao/sure")
(synopsis "Automated testing library in python for python")
(description
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 0030e152b4..fdb7753ba6 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -7159,6 +7159,12 @@ (define-public python-httpretty
(list
#:phases
'(modify-phases %standard-phases
+ (add-after 'unpack 'remove-rednose-dependency
+ (lambda _
+ (substitute* "setup.py"
+ (("'rednose'") ""))
+ (substitute* '("requirements.txt" "setup.cfg")
+ (("rednose.*") ""))))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
@@ -7172,7 +7178,6 @@ (define-public python-httpretty
python-httplib2
python-nose
python-pyparsing
- python-rednose
python-requests
python-sure
python-tornado))
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 08/15] gnu: python-pytest-runner: Update to 6.0.1.
Date: Tue, 25 Feb 2025 08:11:27 +0100
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* gnu/packages/check.scm (python-pytest-runner): Update to 6.0.1.
[arguments]: Remove {phases}.
[native-inputs]: Remove python-pip, python-pypa-build. Add
python-pytest-checkdocs, python-pytest-enabler,
python-types-setuptools.
---
gnu/packages/check.scm | 28 +++++++++++-----------------
1 file changed, 11 insertions(+), 17 deletions(-)
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 61cacb98be..5e3ad744cc 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1984,35 +1984,29 @@ (define-public python-pytest-randomly
(define-public python-pytest-runner
(package
(name "python-pytest-runner")
- (version "6.0.0")
+ (version "6.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pytest-runner" version))
(sha256
(base32
- "11dnhxnjmh4nf1j8rnvx944ha3wg8ggrgrwdcx4c7d19xmi57n5l"))))
+ "16zly218ij0n6fxzqsasia3vh9xkzl9w0cs9pwvqy057hnap7m3h"))))
(build-system pyproject-build-system)
(arguments
(list
;; FIXME: The test suite requires 'python-pytest-virtualenv',
;; but that introduces a circular dependency.
- #:tests? #f
- #:phases
- #~(modify-phases %standard-phases
- (replace 'build
- (lambda _
- (let ((circa-1980 (* 10 366 24 60 60)))
- (setenv "SOURCE_DATE_EPOCH" (number->string circa-1980))
- (invoke "python" "-m" "build" "--wheel" "--no-isolation" "."))))
- (replace 'install
- (lambda _
- (let ((whl (car (find-files "dist" "\\.whl$"))))
- (invoke "pip" "--no-cache-dir" "--no-input"
- "install" "--no-deps" "--prefix" #$output whl)))))))
+ #:tests? #f))
(native-inputs
- (list python-pip python-pypa-build python-pytest
- python-setuptools python-setuptools-scm python-wheel))
+ (list python-pytest
+ python-pytest-checkdocs
+ python-pytest-enabler
+ ;; python-pytest-virtualenv
+ python-setuptools
+ python-setuptools-scm
+ python-types-setuptools
+ python-wheel))
(home-page "https://github.com/pytest-dev/pytest-runner")
(synopsis "Invoke py.test as a distutils command")
(description
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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* gnu/packages/python-xyz.scm (python-multiprocessing-on-dill): Use pyproject-build-system.
[arguments]: Remove field.
[native-inputs]: Remove uneeded python-check-manifest. Add python-pytest.
---
gnu/packages/python-xyz.scm | 12 ++----------
1 file changed, 2 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6cf0862eed..a5eefb8be2 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -30207,17 +30207,9 @@ (define-public python-multiprocessing-on-dill
(sha256
(base32
"1rs5a3hx1fcpfsxxkl5kx6g06c82wqjqgdqyny5l1ggl1wq0rmfn"))))
- (build-system python-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv")))))))
+ (build-system pyproject-build-system)
(propagated-inputs (list python-dill))
- (native-inputs (list python-check-manifest python-pytest python-wheel))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/sixty-north/multiprocessing_on_dill")
(synopsis "Multiprocessing using dill instead of pickle")
(description
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 03/15] gnu: python-cftime: Update to 1.6.4.
Date: Mon, 24 Feb 2025 07:54:50 +0100
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* gnu/packages/python-xyz.scm (python-cftime): Update to 1.6.4.
[arguments]{phases}: Add phase 'remove-unwanted-dev-dependencies.
[native-inputs]: Remove python-check-manifest, python-pytest-cov. Add
python-setuptools.
---
gnu/packages/python-xyz.scm | 20 +++++++++++++-------
1 file changed, 13 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7d21beb4ce..6cf0862eed 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -3719,22 +3719,28 @@ (define-public python-sh
(define-public python-cftime
(package
(name "python-cftime")
- (version "1.6.2")
+ (version "1.6.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cftime" version))
(sha256
- (base32 "1lp6jrjjgl18csn4bcnphn0l16ag4aynvn7x0kins155p07w0546"))))
+ (base32 "1p5fw25hjqpzwxw3662f72ga30kpf8pbbph8fgb7x2kmjdhl09g3"))))
(build-system pyproject-build-system)
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-unwanted-dev-dependencies
+ (lambda _
+ (substitute* "requirements-dev.txt"
+ (("(check-manifest|coverage|coveralls|pytest-cov|twine)")
+ "")))))))
(propagated-inputs
(list python-numpy))
(native-inputs
- (list python-check-manifest
- python-coverage
- python-coveralls
- python-cython
- python-pytest-cov
+ (list python-cython
+ python-pytest
+ python-setuptools
python-sphinx
python-twine
python-wheel))
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76571 <at> debbugs.gnu.org
Subject: [PATCH 02/15] gnu: python-beartype: Update to 0.19.0.
Date: Thu, 20 Feb 2025 16:49:47 +0100
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Content preview: * gnu/packages/python-check.scm (python-beartype): Update
to 0.19.0. [arguments]: Remove former test-flags. [native-inputs]: Remove
python-setuptools, python-wheel. Add python-hatchling, python-numpy [...]
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Content preview: * gnu/packages/python-check.scm (python-beartype): Update
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python-setuptools, python-wheel. Add python-hatchling, python-numpy [...]
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* gnu/packages/python-check.scm (python-beartype): Update to 0.19.0.
[arguments]: Remove former test-flags.
[native-inputs]: Remove python-setuptools, python-wheel. Add
python-hatchling, python-numpy and python-pygments.
---
gnu/packages/python-check.scm | 16 ++++------------
1 file changed, 4 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 582f16ec1d..34125475ad 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -341,24 +341,16 @@ (define-public python-pytest-freezer
(define-public python-beartype
(package
(name "python-beartype")
- (version "0.10.4")
+ (version "0.19.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "beartype" version))
(sha256
- (base32 "0amzckgw9c93bl4jf0q6322j9wyyf3i8vl03yixfkrpllzv6kv14"))))
+ (base32 "0wv598iv9c2s6ivfiara9pnkdlnas8xjw063wvyi0dswpb0xyhny"))))
(build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list
- "beartype_test"
- ;; These tests rely on git through the "get_main_readme_file" helper.
- "-k" (string-append "not test_doc_readme "
- "and not test_sphinx "
- "and not test_pep561_mypy"))))
- (native-inputs (list python-pytest python-setuptools python-wheel))
+ (native-inputs
+ (list python-hatchling python-numpy python-pygments python-pytest))
(home-page "https://github.com/beartype/beartype")
(synopsis "Fast runtime type checking for Python")
(description "Beartype aims to be a very fast runtime type checking tool
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
Full text available.
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Subject: [PATCH 01/15] gnu: python-pillow-heif: Update test-flags.
Date: Thu, 20 Feb 2025 16:47:26 +0100
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Content preview: * gnu/packages/python-xyz.scm
(python-pillow-heif)[arguments]{test-flags}:
Update them. [native-inputs]: Remove uneeded python-pylint. ---
gnu/packages/python-xyz.scm | 14 +++ 1 file change [...]
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Content preview: * gnu/packages/python-xyz.scm (python-pillow-heif)[arguments]{test-flags}:
Update them. [native-inputs]: Remove uneeded python-pylint. --- gnu/packages/python-xyz.scm
| 14 +++ 1 file change [...]
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* gnu/packages/python-xyz.scm (python-pillow-heif)[arguments]{test-flags}:
Update them.
[native-inputs]: Remove uneeded python-pylint.
---
gnu/packages/python-xyz.scm | 14 +++-----------
1 file changed, 3 insertions(+), 11 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9ba8220357..7d21beb4ce 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -11424,17 +11424,10 @@ (define-public python-pillow-heif
(arguments
(list
#:test-flags
- #~(list "-k" ; XXX: 10/12 bit tests fail
+ #~(list "-k"
(string-append
- "not test_save_bgr_16bit_to_10_12_bit"
- " and not test_save_bgra_16bit_to_10_12_bit"
- " and not test_open_heif_compare_non_standard_modes_data"
- " and not test_open_save_disable_16bit"
- " and not test_heif_read_images[image_path16]"
- " and not test_heif_read_images[image_path43]"
- " and not test_premultiplied_alpha"
- " and not test_hdr_save"
- " and not test_I_color_modes_to_10_12_bit"))))
+ "not test_heif_read_images[image_path25]"
+ " and not test_heif_read_images[image_path49]"))))
(inputs (list libheif))
(propagated-inputs (list python-pillow))
(native-inputs (list opencv ; for opencv-python
@@ -11443,7 +11436,6 @@ (define-public python-pillow-heif
python-numpy
python-packaging
python-pre-commit
- python-pylint
python-pympler
python-setuptools
python-pytest
--
2.48.1
--
Best regards,
Nicolas Graves
guix-patches@HIDDEN:bug#76571; Package guix-patches.
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There are still quite some failing packages scientific (bioinformatics and astro packages), but those seem related to numpy deprecations and updates. Nicolas Graves (15): gnu: python-pillow-heif: Update test-flags. gnu: python-beartype: Update to 0.19.0. gnu: python-cftime: Update to 1.6.4. gnu: python-multiprocessing-on-dill: Use pyproject-build-system. gnu: python-pykdtree: Update to 1.3.9. gnu: python-peachpy: Update to 0.2.0-3.349e8f8. gnu: sdkmanager: Update python-urllib3. gnu: python-pytest-runner: Update to 6.0.1. gnu: Remove python-rednose. gnu: python-vcrpy: Update to 7.0.0. gnu: python-pyparsing: Update to 3.2.1. gnu: behave: Remove python-nose native-input. gnu: Remove python-dictpath. gnu: python-ipympl: Update to 0.9.2. gnu: python-anndata: Ignore failing test. gnu/packages/android.scm | 5 +- gnu/packages/check.scm | 60 ++++--------------- gnu/packages/jupyter.scm | 6 +- gnu/packages/python-build.scm | 10 ++-- gnu/packages/python-check.scm | 37 +++++------- gnu/packages/python-web.scm | 1 - gnu/packages/python-xyz.scm | 109 ++++++++++++++-------------------- gnu/packages/web.scm | 7 ++- 8 files changed, 91 insertions(+), 144 deletions(-) -- 2.48.1 -- Best regards, Nicolas Graves
Nicolas Graves <ngraves@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#76571; Package guix-patches.
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