X-Loop: help-debbugs@HIDDEN Subject: bug#76959: Empty Scheme files in system generation, breaks `guix system` and boot Resent-From: Leo Famulari <leo@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: bug-guix@HIDDEN Resent-Date: Tue, 11 Mar 2025 20:31:02 +0000 Resent-Message-ID: <handler.76959.B.174172505815167 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: report 76959 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 76959 <at> debbugs.gnu.org X-Debbugs-Original-To: bug-guix@HIDDEN Received: via spool by submit <at> debbugs.gnu.org id=B.174172505815167 (code B ref -1); Tue, 11 Mar 2025 20:31:02 +0000 Received: (at submit) by debbugs.gnu.org; 11 Mar 2025 20:30:58 +0000 Received: from localhost ([127.0.0.1]:45932 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1ts6Fd-0003wZ-N4 for submit <at> debbugs.gnu.org; Tue, 11 Mar 2025 16:30:58 -0400 Received: from lists.gnu.org ([2001:470:142::17]:48404) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <leo@HIDDEN>) id 1ts6Fa-0003wC-Fa for submit <at> debbugs.gnu.org; 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Tue, 11 Mar 2025 16:30:10 -0400 (EDT) Date: Tue, 11 Mar 2025 16:29:43 -0400 From: Leo Famulari <leo@HIDDEN> Message-ID: <Z9CdNwX8vaD5UPtG@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Received-SPF: pass client-ip=202.12.124.144; envelope-from=leo@HIDDEN; helo=fout-b1-smtp.messagingengine.com X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_LOW=-0.7, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.1 (/) In recent days, I reconfigured my system in the same way that I always do it. The resulting system was malformed, preventing boot and the use of `guix system`. Specifically, the files that make up the system itself --- such as '/var/guix/profiles/system-NNN-link/parameters' --- are empty! Zero bytes. IIRC, I was able to work around it by running the activation scripts from an older generation "by hand", but I don't remember for sure if this was sufficient or not. For example: `guile -s /var/guix/profiles/system-NNN-link/activate` I didn't report this to bug-guix (although I did complain on #guix), because I thought it was just me, but now another user on #guix has the same problem: https://logs.guix.gnu.org/guix/2025-03-11.log#205907 `guix gc --verify=contents` reported all the broken files. Repair was not possible for most of them. `btrfs scrub` was successful, and memtest86+ passed 9 times, so I'm relatively confident in the filesystem and the hardware. I don't have a handle on the relevant details, but here is some system information: ------ # cat /etc/fstab # This file was generated from your Guix configuration. Any changes # will be lost upon reboot or reconfiguration. UUID=287d4ed7-7fc8-4726-8882-fbe1f71fe7cd / btrfs defaults UUID=3A45-1EB8 /boot/efi vfat defaults # guix system describe Generation 92 Mar 10 2025 14:02:20 (current) file name: /var/guix/profiles/system-92-link canonical file name: /gnu/store/ws8gp0ylxppqxbraac14r0crk1jam7n3-system label: GNU with Linux 6.13.6 bootloader: grub-efi root device: UUID: 287d4ed7-7fc8-4726-8882-fbe1f71fe7cd kernel: /gnu/store/bk469qvagzgxjvxbvj7myplyxzqa9qk0-linux-6.13.6/bzImage channels: nonguix: repository URL: https://gitlab.com/nonguix/nonguix branch: master commit: 944619c1947ba59823f4ad6d8b13842b7e162d76 guix: repository URL: https://git.savannah.gnu.org/git/guix.git branch: kernel-updates commit: ccf4b131e489f6845a041d566bbd1ce929324faa configuration file: /gnu/store/aa5dq0j4ag28zf2vlr3n0jv8p2wi5y4s-configuration.scm ------
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: Leo Famulari <leo@HIDDEN> Subject: bug#76959: Acknowledgement (Empty Scheme files in system generation, breaks `guix system` and boot) Message-ID: <handler.76959.B.174172505815167.ack <at> debbugs.gnu.org> References: <Z9CdNwX8vaD5UPtG@HIDDEN> X-Gnu-PR-Message: ack 76959 X-Gnu-PR-Package: guix Reply-To: 76959 <at> debbugs.gnu.org Date: Tue, 11 Mar 2025 20:31:02 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): bug-guix@HIDDEN If you wish to submit further information on this problem, please send it to 76959 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 76959: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D76959 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
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boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain Content-Transfer-Encoding: quoted-printable Leo Famulari <leo@HIDDEN> writes: > I didn't report this to bug-guix (although I did complain on #guix), > because I thought it was just me, but now another user on #guix has the > same problem: > > https://logs.guix.gnu.org/guix/2025-03-11.log#205907 > > `guix gc --verify=3Dcontents` reported all the broken files. Repair was > not possible for most of them. I do not really have any useful information to add, but this was happening to me as well over the past *months*. Happens occasionally, both in QEMU and on real HW. BTRFS scrub is always fine, and just (some of) *new* items copied during the deploy are corrupted. Since no one else reported anything, I assumed it was just me. I cannot really reproduce it, so I have just assumed I keep "holding it wrong". The trick with running the activation script by hand is much appreciated, usually the recovery was fairly painful process. Tomas =2D-=20 There are only two hard things in Computer Science: cache invalidation, naming things and off-by-one errors. --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEEt4NJs4wUfTYpiGikL7/ufbZ/wakFAmfQoHoOHH5Ad29sZnNk ZW4uY3oACgkQL7/ufbZ/wakmKg/+IfwhE39BW+xLLwxvrB3EBoVqxhtpWd/f8xfi NR8TkeevMNL/9y8kw+YWXm2SPE/fgIuxhxy9VhOGiad5kWY5aCydXkGKylVhan3U 04+QJge5aKghoJd08grp2e9LRviyWQweLcfs67QqPnQ0h56N6W2Q0MxLIj8Rm3ZG dpLfnEsEqZMC2qBRmcH3gdMMRuOp1ifw2JKCWgYuYxEGlAm27P8GbSTt9GR3JYT6 uLtYdowSq9lKxDH1IysnsqEtVfHxv3KPMVmO5DCtw3DY5jOYkB6SKe3FVD1p65+u egYOqywgKTAencmSNy5uprBFimJOC79JQpqmDRG6+AfbjUyaUyRol9IdaAfCp3ul H897Nq9ndAM1NPeS1pQkE43HFkTrqMIiy5VbcevFfNGQS+D/5M2cnHGWIxBMq1+Y ZtDqj2+Dx8Be4AWuu4uez+PicBxwVxvdIIt41N7hHnBaKY9tEvOSiRZ4EUWvQIXi jcx789Q6ciqQJLtVmi4XppeKJQg+zDmlLd4Y0el1kZdct8Wvm6Ts6e2fcPn3X4VE rMyX5/Xq8ryKaItpZTQ7vUtjOG2cK3AkASKu0x6wYMYJX8uwOCj7LMU6Y9OVc7GF 2B1l91w6QA8uA5mKs6n3pSTu4l4KQoJOB5ZnlZyWfaowz19T76/KRHpqA4r3H7k2 EsnJTWk= =MBnk -----END PGP SIGNATURE----- --=-=-=--
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