Received: (at 76959) by debbugs.gnu.org; 11 Mar 2025 20:43:46 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Mar 11 16:43:46 2025 Received: from localhost ([127.0.0.1]:46006 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1ts6S1-0004Y2-P8 for submit <at> debbugs.gnu.org; Tue, 11 Mar 2025 16:43:46 -0400 Received: from wolfsden.cz ([37.205.8.62]:56966) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <~@wolfsden.cz>) id 1ts6Ry-0004Xs-I8 for 76959 <at> debbugs.gnu.org; Tue, 11 Mar 2025 16:43:44 -0400 Received: by wolfsden.cz (Postfix, from userid 104) id 70CBC2995C6; Tue, 11 Mar 2025 20:43:40 +0000 (UTC) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=wolfsden.cz; s=mail; t=1741725820; bh=DMWR8FkKTmWFUUvVXx+O2n9snkWdh25MKvqE3CvN6yk=; h=From:To:Cc:Subject:In-Reply-To:References:Date; b=KJnLusmNI0m+MlDN2zELQTmCKMHcryCravQkMU2Q9VblasSTX72uQWh0tJPW1FkCr bIsS1tt0yRGux2vMdO/+PQeEEoMjcoXsRIVmrKjbz4rVho9XuRnocY7VSsqkVKstsn O9Drsi9iCdvBgxOrMdBb43k9MJzPNls3SWxRIRCZJETqyNjLzcdjooULaYXMzcX8sk HARtRSg7nlsAgemG4ZZTfinR20FXKNPG91ZeK3pHhaz/oEOFAHi023uplepvgu1Vo1 H1u63cy2ESeD6AtKbWDPqQlYw6TXFtjmDPa9DOkqsOztfTyzdw9r2klaARb3DitxwP Xm5x6X2/8XCzbjecmR3nFXEM14WW2RrHyXL5ZLD3kASCKyPhwDnDGGBYTsIKGah88X LJbdUyxK/40LRE6q4c+WjdrGCZMjTBDJ/o26FjLt94OplsG6DxOtSE6ENY3EoOujf9 orTdD26kQ1gqZzYi5BJR7+0F7Qwt4IvlDkp2huL054avuY4N/UQn4NwZ5PNlz76x71 B96XbxQHQ7/FouhGWPTR1vD+UcTqlncILW+rl0T8jZ7EfUTmz7bVqYyN4jM7XR3kG/ lXW5HJDB3V0XOxZup9OPa6iGsyDgB9dwTzoNxuKVSIK1cEyNfyRKaRvSAgHYxzSgMe MPl4WnQZcqTnUeX996CdoCGc= X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on wolfsden X-Spam-Level: X-Spam-Status: No, score=-3.1 required=5.0 tests=ALL_TRUSTED,BAYES_00, DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from localhost (unknown [128.0.188.242]) by wolfsden.cz (Postfix) with ESMTPSA id F24A429A9C2; Tue, 11 Mar 2025 20:43:38 +0000 (UTC) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=wolfsden.cz; s=mail; t=1741725819; bh=DMWR8FkKTmWFUUvVXx+O2n9snkWdh25MKvqE3CvN6yk=; h=From:To:Cc:Subject:In-Reply-To:References:Date; b=mnFfh06ZWfYFyxD0gzmMHmJMQ9eoJgOBVLSGC8oA6qYWNdVw/uUFMg4zN958wDW2V WTHj6srdYspvqVQGZ4rElYklQXf+P3pVDaE81vxxsMVWQsu8QW6BBjbNnXx4rz1qJx lXzc+QiXaWsBk1PGfrjUuWPEdQGgKjr8UjrqhQqJgoEZnKv4/YEKufC2QZ2CJPiG5c tUW3Ixovr3l7dXorZbFEPBwODxFG/xVGY79b5OsNoQlnqPI88jsmajHWKs1SZkTp2l pE1ASh73qp8SKVEKAYEn3hhPSyZfHQnLtgcK0mcz/8WRP8ubuPEz8yVOaa808La3f4 Vm+4Si0/blqheMupWuxxvab5M3aGClU9ikwVpnxcj6wnJ37g9yL/NZzUXGBT8vVbFN /C/SEMewOhsrev3POVxJBigudsf+lUt/X5GRZ5A3LgG1H0Rt1DnL5rNV9vI95Wkns7 uOsJkpQwH3od/dKWp2ZsowbOejVFLDTwsRnPdlOxRvt8PhkyARhetRk8sDMX1UkduG wSePazIqLRiVKlrXn9lCcXgPWyItcg2c5Co8yvOOAuEgx9mW/cS4dlbj4ymK48pJ6F AXuWans6Ip5SFvEEjbwLsm660PCOymRq81pV489s7NHWVm6fPtRkaWDbkb6YDNE7lL ZHjhgtQ5SVlPHIAkK2874e0M= From: Tomas Volf <~@wolfsden.cz> To: Leo Famulari <leo@HIDDEN> Subject: Re: bug#76959: Empty Scheme files in system generation, breaks `guix system` and boot In-Reply-To: <Z9CdNwX8vaD5UPtG@HIDDEN> (Leo Famulari's message of "Tue, 11 Mar 2025 16:29:43 -0400") References: <Z9CdNwX8vaD5UPtG@HIDDEN> Date: Tue, 11 Mar 2025 21:43:38 +0100 Message-ID: <875xkfxpqd.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 76959 Cc: 76959 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain Content-Transfer-Encoding: quoted-printable Leo Famulari <leo@HIDDEN> writes: > I didn't report this to bug-guix (although I did complain on #guix), > because I thought it was just me, but now another user on #guix has the > same problem: > > https://logs.guix.gnu.org/guix/2025-03-11.log#205907 > > `guix gc --verify=3Dcontents` reported all the broken files. Repair was > not possible for most of them. I do not really have any useful information to add, but this was happening to me as well over the past *months*. Happens occasionally, both in QEMU and on real HW. BTRFS scrub is always fine, and just (some of) *new* items copied during the deploy are corrupted. Since no one else reported anything, I assumed it was just me. I cannot really reproduce it, so I have just assumed I keep "holding it wrong". The trick with running the activation script by hand is much appreciated, usually the recovery was fairly painful process. Tomas =2D-=20 There are only two hard things in Computer Science: cache invalidation, naming things and off-by-one errors. --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEEt4NJs4wUfTYpiGikL7/ufbZ/wakFAmfQoHoOHH5Ad29sZnNk ZW4uY3oACgkQL7/ufbZ/wakmKg/+IfwhE39BW+xLLwxvrB3EBoVqxhtpWd/f8xfi NR8TkeevMNL/9y8kw+YWXm2SPE/fgIuxhxy9VhOGiad5kWY5aCydXkGKylVhan3U 04+QJge5aKghoJd08grp2e9LRviyWQweLcfs67QqPnQ0h56N6W2Q0MxLIj8Rm3ZG dpLfnEsEqZMC2qBRmcH3gdMMRuOp1ifw2JKCWgYuYxEGlAm27P8GbSTt9GR3JYT6 uLtYdowSq9lKxDH1IysnsqEtVfHxv3KPMVmO5DCtw3DY5jOYkB6SKe3FVD1p65+u egYOqywgKTAencmSNy5uprBFimJOC79JQpqmDRG6+AfbjUyaUyRol9IdaAfCp3ul H897Nq9ndAM1NPeS1pQkE43HFkTrqMIiy5VbcevFfNGQS+D/5M2cnHGWIxBMq1+Y ZtDqj2+Dx8Be4AWuu4uez+PicBxwVxvdIIt41N7hHnBaKY9tEvOSiRZ4EUWvQIXi jcx789Q6ciqQJLtVmi4XppeKJQg+zDmlLd4Y0el1kZdct8Wvm6Ts6e2fcPn3X4VE rMyX5/Xq8ryKaItpZTQ7vUtjOG2cK3AkASKu0x6wYMYJX8uwOCj7LMU6Y9OVc7GF 2B1l91w6QA8uA5mKs6n3pSTu4l4KQoJOB5ZnlZyWfaowz19T76/KRHpqA4r3H7k2 EsnJTWk= =MBnk -----END PGP SIGNATURE----- --=-=-=--
bug-guix@HIDDEN:bug#76959; Package guix.
Full text available.Felix Lechner <felix.lechner@HIDDEN>
to control <at> debbugs.gnu.org.
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Date: Tue, 11 Mar 2025 16:29:43 -0400
From: Leo Famulari <leo@HIDDEN>
To: bug-guix@HIDDEN
Subject: Empty Scheme files in system generation, breaks `guix system` and boot
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In recent days, I reconfigured my system in the same way that I always
do it.
The resulting system was malformed, preventing boot and the use of `guix
system`.
Specifically, the files that make up the system itself --- such as
'/var/guix/profiles/system-NNN-link/parameters' --- are empty! Zero
bytes.
IIRC, I was able to work around it by running the activation scripts
from an older generation "by hand", but I don't remember for sure if
this was sufficient or not. For example:
`guile -s /var/guix/profiles/system-NNN-link/activate`
I didn't report this to bug-guix (although I did complain on #guix),
because I thought it was just me, but now another user on #guix has the
same problem:
https://logs.guix.gnu.org/guix/2025-03-11.log#205907
`guix gc --verify=contents` reported all the broken files. Repair was
not possible for most of them.
`btrfs scrub` was successful, and memtest86+ passed 9 times, so I'm
relatively confident in the filesystem and the hardware.
I don't have a handle on the relevant details, but here is some system
information:
------
# cat /etc/fstab
# This file was generated from your Guix configuration. Any changes
# will be lost upon reboot or reconfiguration.
UUID=287d4ed7-7fc8-4726-8882-fbe1f71fe7cd / btrfs defaults
UUID=3A45-1EB8 /boot/efi vfat defaults
# guix system describe
Generation 92 Mar 10 2025 14:02:20 (current)
file name: /var/guix/profiles/system-92-link
canonical file name: /gnu/store/ws8gp0ylxppqxbraac14r0crk1jam7n3-system
label: GNU with Linux 6.13.6
bootloader: grub-efi
root device: UUID: 287d4ed7-7fc8-4726-8882-fbe1f71fe7cd
kernel: /gnu/store/bk469qvagzgxjvxbvj7myplyxzqa9qk0-linux-6.13.6/bzImage
channels:
nonguix:
repository URL: https://gitlab.com/nonguix/nonguix
branch: master
commit: 944619c1947ba59823f4ad6d8b13842b7e162d76
guix:
repository URL: https://git.savannah.gnu.org/git/guix.git
branch: kernel-updates
commit: ccf4b131e489f6845a041d566bbd1ce929324faa
configuration file: /gnu/store/aa5dq0j4ag28zf2vlr3n0jv8p2wi5y4s-configuration.scm
------
Leo Famulari <leo@HIDDEN>:bug-guix@HIDDEN.
Full text available.bug-guix@HIDDEN:bug#76959; Package guix.
Full text available.
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1994-97 Ian Jackson.