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[127.0.0.1]) by director4.derp.mail-out.ovh.net (inspect_sender_mail_agent) with SMTP for <guix-patches@HIDDEN>; Fri, 4 Apr 2025 19:10:01 +0000 (UTC) Received: from mta10.priv.ovhmail-u1.ea.mail.ovh.net (unknown [10.110.118.165]) by director4.derp.mail-out.ovh.net (Postfix) with ESMTPS id 4ZTp895Hf3zyG5; Fri, 4 Apr 2025 19:10:01 +0000 (UTC) Received: from ngraves.fr (unknown [10.1.6.1]) by mta10.priv.ovhmail-u1.ea.mail.ovh.net (Postfix) with ESMTPSA id 5CEEFDA3963; Fri, 4 Apr 2025 19:10:01 +0000 (UTC) Authentication-Results: garm.ovh; auth=pass (GARM-106R006b126e176-6433-4f4b-9cc5-f1c43450b180, 5C763BAE2B049B0552D0CEA89988AE409CD35AAA) smtp.auth=ngraves@HIDDEN X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves <ngraves@HIDDEN> To: guix-patches@HIDDEN Subject: [PATCH python-team 00/38] Further patches on python-team. Date: Fri, 4 Apr 2025 21:06:56 +0200 Message-ID: <20250404190959.30444-1-ngraves@HIDDEN> X-Mailer: git-send-email 2.49.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 3353211399867917026 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduledvvdehucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffoggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepkeffgeetfffgffejgeejvdffgfdtvdeuueetgfefuedvjeegvdegjeejveeuueevnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepvddprhgtphhtthhopehguhhigidqphgrthgthhgvshesghhnuhdrohhrghdprhgtphhtthhopehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpoffvtefjohhsthepmhhoheeivdgmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=Vf/NP6iPMVvhIhOomNbPMZThklvayK4YPwjcpWguFQ0=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1743793802; v=1; b=2jVA1TUZKD6Tg0KXhPb51q5eXT4IluPmf7jLS6BMSnbwX3qX+P4+UDYCccj+eht/BY0Tee9H 4dxM1hnPIOuqrox2UFyOltuRvx64MqnuCn1Aq883uSVT51DrxAtUfsjGrzn/3ioMAg8eMrCt7l7 B1UfZYGZ8gLd9vhFM4aR/dTN5VI27tHdQT34ndDlqAT/q3mU8JPZc9LhKSdhd6hCEBRxoUqNNB6 WgbntSU/f6sBMtTm4PuVEcWaIK6AmzVMxY3c8zKQ+gA/zf9RO28voj3tdVV0Q+OkskEmZY76HXm TlUULehXuRrSGbVTY0l4L8b8dD0/23MUZlNVjDBckzEHg== Received-SPF: permerror client-ip=46.105.55.234; envelope-from=ngraves@HIDDEN; helo=7.mo562.mail-out.ovh.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H2=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, RCVD_IN_VALIDITY_SAFE_BLOCKED=0.001, SPF_HELO_NONE=0.001, T_SPF_PERMERROR=0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: submit Cc: Nicolas Graves <ngraves@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) As usual. A few notes: - clipper2 was added for cura IIRC, which requires it but isn't ready yet / requires more work. - I couldn't test python-pytensor update because of build times, so it might still break. Nicolas Graves (38): gnu: Add clipper2. gnu: labelme: Add missing native-inputs. gnu: scregseg: Add missing native-inputs. gnu: autokey: Add missing native-inputs. gnu: mageck: Add missing native-inputs. gnu: python-pytroch-geometric: Skip failing tests. gnu: Add string-view-lite. gnu: python-pytensor: Update to 2.30.1. gnu: python-vaex-core: Update to 4.17.1. gnu: Remove pybind11-2.3. gnu: python-property-cached: Fix build. gnu: python-attr: Update to 0.3.2. gnu: python-serpent: Update to 1.41. gnu: python-pyro4: Update to 4.82. gnu: python-lcapy: Add missing native-inputs. gnu: python-linear-operator: Update to 0.6. gnu: gpytorch: Remove uneeded inputs. gnu: python-botorch: Add missing native-inputs. gnu: python-gpytorch: Update to 1.14. gnu: python-botorch: Update to 0.13.0. gnu: python-pgmpy: Update to 1.0.0. gnu: python-qasync: Ignore failing test. gnu: python-bed-reader: Fix build and enable tests. gnu: python-pysnptools: Fix build and enable tests. gnu: Add python-poetry-core-next. gnu: python-duniterpy: Update to 1.2.1. gnu: python-pgpy: Fix tests. gnu: python-furl: Update to 2.1.4. gnu: python-rq: Update to 2.3.1. gnu: python-crontab: Update to 3.2.0. gnu: python-stone: Update to 3.3.9. gnu: python-rq-scheduler: Update to 0.14. gnu: python-port-for: Update to 0.7.4. gnu: Remove python-cookies. gnu: python-django-rq: Update to 3.0.0. gnu: python-flask-seasurf: Update to 2.0.0. gnu: python-country-converter: Add missing native-input. gnu: python-itemloaders: Update to 1.3.2. gnu/local.mk | 3 + gnu/packages/bioinformatics.scm | 280 ++++++++++++++---- gnu/packages/cpp.scm | 56 +++- gnu/packages/databases.scm | 67 +++-- gnu/packages/django.scm | 28 +- gnu/packages/engineering.scm | 4 +- gnu/packages/finance.scm | 40 +-- gnu/packages/image-processing.scm | 3 +- gnu/packages/iso-codes.scm | 3 +- gnu/packages/machine-learning.scm | 56 ++-- .../python-bed-reader-use-store-samples.patch | 147 +++++++++ .../python-property-cached-asyncio-3_11.patch | 201 +++++++++++++ .../python-vaex-core-fix-tsl-use.patch | 67 +++++ gnu/packages/python-build.scm | 10 + gnu/packages/python-crypto.scm | 15 +- gnu/packages/python-science.scm | 87 +++--- gnu/packages/python-web.scm | 60 ++-- gnu/packages/python-xyz.scm | 186 ++++++------ gnu/packages/statistics.scm | 16 +- 19 files changed, 987 insertions(+), 342 deletions(-) create mode 100644 gnu/packages/patches/python-bed-reader-use-store-samples.patch create mode 100644 gnu/packages/patches/python-property-cached-asyncio-3_11.patch create mode 100644 gnu/packages/patches/python-vaex-core-fix-tsl-use.patch -- 2.49.0
Nicolas Graves <ngraves@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#77542; Package guix-patches.
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